Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08220 301 / 4e-103 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021398 [exp] 488 / 1e-176 AT1G08220 327 / 2e-113 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G002000 [exp] 319 / 3e-110 AT1G08220 282 / 8e-96 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05176 [flax] [poplar] ATP-synt_10 ATP10 protein
Representative CDS sequence Show only first row Show all	>Lus10005355 pacid=23148522 polypeptide=Lus10005355 locus=Lus10005355.g ID=Lus10005355.BGIv1.0 annot-version=v1.0 ATGCAGAGAGTGAATCGATTCATGAATCTAGCTCGCAGTTCATCCAGAGCTTCGCTGGTCCTTCAAGAAGCTGGACCTCAACGACGTATCGTCAGAGACC ATGGAAACCCGACGCAACTCCATCAATTGTCCTCCGTTCGGTTCCTCGACTTCTATCAGCTTGGAAACAAAACAGCTATCGAGAAGGAGCGAGCTAGGAT TACAGATGAGATGAATAGAGGATACTTTGCTGACATGGCGGAGTTTAAGAAACACGGCGGGAAGATTGCTCAGGCGAATAAGATTATAATTCCTGCTACC GCAGCGGTGAAGTTTCCTGATTTCGAAGTGGACTTCTCGGGCGGTAGGACTTTAAAGCTGCCTACTCGATTTGCAGAGAATGCTTCGAGTTCTGATGCAT CCGCCATTGCTCCAAAGGCGTCGCTGCTGTGTCTTTCTTTTAGAGCAAGCTCTCAGGGTATGATTGACTCTTGGACTGTGCCTTTCCTTGATGCATTTGG TGATGCCAAGAATATTCAGCTCTATGAGGTGTCATTCATAGACTCGTGGCTATTATGTCGGAGTCCAATCAAGAGGCTGCTGCTTCGAACAATGAAGAAA TCAAAAGTCAACACAAACCAAGAACTTCAAAAGCAGGTTGCTTACTCCTTTGGTGACCACTATGACTTCAGAAAAGAACTTAAAATATTGAACCTCCTTA CAGGGTACATTTACCTACTCGACAAATTCGGTAAAATAAGATGGCAAGGGTTTGGCTTGGCCACTCCGGAAGAGATGTCTTCCCTCCTTTCCTGCACTTC CTTGCTCTTAGAAGATTGA
AA sequence Show only first row Show all	>Lus10005355 pacid=23148522 polypeptide=Lus10005355 locus=Lus10005355.g ID=Lus10005355.BGIv1.0 annot-version=v1.0 MQRVNRFMNLARSSSRASLVLQEAGPQRRIVRDHGNPTQLHQLSSVRFLDFYQLGNKTAIEKERARITDEMNRGYFADMAEFKKHGGKIAQANKIIIPAT AAVKFPDFEVDFSGGRTLKLPTRFAENASSSDASAIAPKASLLCLSFRASSQGMIDSWTVPFLDAFGDAKNIQLYEVSFIDSWLLCRSPIKRLLLRTMKK SKVNTNQELQKQVAYSFGDHYDFRKELKILNLLTGYIYLLDKFGKIRWQGFGLATPEEMSSLLSCTSLLLED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08220			unknown protein		Lus10005355 [exp]	0	1
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	1.4	0.8874
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	3.5	0.8774
AT1G09300			Metallopeptidase M24 family pr...		Lus10031427 [exp]	5.3	0.8766
AT2G45320			unknown protein		Lus10030280 [exp]	8.8	0.8318
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	9.7	0.8713
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	11.0	0.8498
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10043201 [exp]	11.8	0.8709
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10001732 [exp]	12.2	0.8713
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10014676 [exp]	15.7	0.8819
AT5G17620			unknown protein		Lus10013643 [exp]	15.7	0.8449

Compare expression of checked genes

Lus10005355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.