Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22850 610 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G08210 488 / 1e-169 Eukaryotic aspartyl protease family protein (.1) AT2G36670 479 / 6e-166 Eukaryotic aspartyl protease family protein (.1.2) AT1G05840 284 / 3e-90 Eukaryotic aspartyl protease family protein (.1) AT5G36260 280 / 9e-89 Eukaryotic aspartyl protease family protein (.1) AT3G02740 275 / 1e-86 Eukaryotic aspartyl protease family protein (.1) AT1G65240 257 / 6e-80 Eukaryotic aspartyl protease family protein (.1) AT3G42550 214 / 8e-64 Eukaryotic aspartyl protease family protein (.1) AT5G43100 155 / 1e-40 Eukaryotic aspartyl protease family protein (.1) AT3G25700 147 / 7e-39 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021397 [exp] 845 / 0 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 484 / 3e-168 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 484 / 7e-168 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 482 / 1e-158 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10036430 [exp] 313 / 2e-101 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041103 [exp] 305 / 3e-98 AT3G02740 548 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 295 / 2e-94 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 294 / 5e-94 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 271 / 4e-85 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G213600 [exp] 662 / 0 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 656 / 0 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 506 / 1e-176 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.006G118800 [exp] 501 / 9e-175 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 283 / 6e-90 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 277 / 2e-87 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 162 / 4e-43 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 152 / 1e-39 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 137 / 8e-35 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.008G115900 [exp] 130 / 1e-32 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10005356 pacid=23148516 polypeptide=Lus10005356 locus=Lus10005356.g ID=Lus10005356.BGIv1.0 annot-version=v1.0 ATGGCGTCGCTTTCTCCGGCGACCCTCGCCGCCGTCTTACTCGCCGTCGCAACCGTCGCCGGAGGCGCCTTCCCCGCCACCTTGCAGCTAGAGCGCGGGA TCCCTCTACCGAGCCGTAAAGTCGGGCTCAGTCAAGCAACAGCCAGAGGAAGCGGCCGGCAACGCACGCAGGTTGACCGTCACCGCAGAATGTTGCAGTC CTCCGCCGCCGCCGACGGCGTCGTCGATTTCCCCGTTCAAGGAACCTTCAACCCTTTCCTCGTCGGGTTGTATTATACAAGATTGCAATTGGGTTCTCCA CCAAAGGATTTCTATGTACAGATAGACACAGGGAGTGATGTTCTATGGGTTAGCTGTAACAACTGCAATGGCTGCCCTGTTTCCAGTGGCCTTCAGATTC CATTGAATTTCTTTGATTCCGGGAGCTCATCGACATCCTCGTTGATATCCTGCTCGGATCAACGGTGTGCTTTAGGGATCGAAGCGGCCGATTCGGGCTG CTTGGGGCAGACAAACAACCAATGTGGATATACTTTTCAGTATGGTGATGGGAGTGGCACTTCTGGCTACTATGTTCAAGACATGTTGCATCTTGACACC ATTGTTGGAGGGTCTCTCACTACTAATTCCACTGTCCCCATTGTGTTTGGGTGTAGCATTCTACAAACGGGGGACTTGACCAAGCCGGACAGAGCAGTGG ATGGGATATTTGGATTCGGACAGCAAGGGCTTTCGGTTGTCTCGCAGCTTGCTTCGCAAGGGGTGACGCCTAGAGTGTTCTCTCATTGTTTGAAAGGTGA TGATGGTGGTGGTGGTATACTGGTTCTCGGAGAGATAGTGGAGCCGAATATCGTGTACACTCCGCTTGTTCCATCACAGCCACATTATAATGTGAATCTG CAGAGTATATCAGTGGGTGGCCAAAGCTTAGCCATCGATCCATCGGTCTTCTCAACATCAGGCAACAAAGGAACCATAGTCGACTCAGGAACAACCTTGG CGTACCTCGCTGAACCAGCTTACGGACCTTTTCTCAGTGCTATCAACAATGCTGTTTCGCAAAACGTGCGGCCAGTTGTTTCGAAGGGGCAACAGTGCTA CTTGATCACCAACAGTGTCAATGACCTCTTTCCTCAAGTTAGCTTACACTTCTCTGGTGGTGCATCCATGATTTTAACACCTCAGGACTACCTTGTGCAG CAAAATAATATCGGCGGATCTACAGTATGGTGCATTGGTTTCCAGAAAATGCAGGGTCAAGGAGTTACAATCTTAGGAGATCTTATTCTGAAAGACAAGA TCTTCGTCTACGACATTGCGAATCAGCAGGTTGGATGGACTAACTACGACTGTTCGATGTCGGTCAATGTCTCGACAGCTGAGAACACCGGCAGGACAGA ATTCGTCAATGCGGGGCAGCTAGGCAATGCTGGCTCTCCGCGAAATAGACCAATGCAAGCAGCAGCCATGATTGTCATCACTTTAGCATCCATAACCATG ATCAGCAATCCCCTGTCAAATCTCGGGGGTTTATAA
AA sequence Show only first row Show all	>Lus10005356 pacid=23148516 polypeptide=Lus10005356 locus=Lus10005356.g ID=Lus10005356.BGIv1.0 annot-version=v1.0 MASLSPATLAAVLLAVATVAGGAFPATLQLERGIPLPSRKVGLSQATARGSGRQRTQVDRHRRMLQSSAAADGVVDFPVQGTFNPFLVGLYYTRLQLGSP PKDFYVQIDTGSDVLWVSCNNCNGCPVSSGLQIPLNFFDSGSSSTSSLISCSDQRCALGIEAADSGCLGQTNNQCGYTFQYGDGSGTSGYYVQDMLHLDT IVGGSLTTNSTVPIVFGCSILQTGDLTKPDRAVDGIFGFGQQGLSVVSQLASQGVTPRVFSHCLKGDDGGGGILVLGEIVEPNIVYTPLVPSQPHYNVNL QSISVGGQSLAIDPSVFSTSGNKGTIVDSGTTLAYLAEPAYGPFLSAINNAVSQNVRPVVSKGQQCYLITNSVNDLFPQVSLHFSGGASMILTPQDYLVQ QNNIGGSTVWCIGFQKMQGQGVTILGDLILKDKIFVYDIANQQVGWTNYDCSMSVNVSTAENTGRTEFVNAGQLGNAGSPRNRPMQAAAMIVITLASITM ISNPLSNLGGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22850			Eukaryotic aspartyl protease f...		Lus10005356 [exp]	0	1
AT5G22850			Eukaryotic aspartyl protease f...		Lus10021397 [exp]	1.0	0.8662
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10033232 [exp]	1.4	0.8604
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	3.5	0.8210
AT4G32600			RING/U-box superfamily protein...		Lus10033075 [exp]	4.5	0.7946
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027139 [exp]	7.5	0.8191
AT1G01770			unknown protein		Lus10014782 [exp]	9.0	0.7968
AT4G11800			Calcineurin-like metallo-phosp...		Lus10021750 [exp]	10.4	0.7861
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	12.6	0.7995
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	13.2	0.8159
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	13.6	0.8140

Compare expression of checked genes

Lus10005356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.