Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19070 458 / 3e-159 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G48930 271 / 3e-86 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 235 / 2e-72 HXXXD-type acyl-transferase family protein (.1) AT5G41040 191 / 1e-55 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 186 / 5e-54 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 176 / 5e-50 HXXXD-type acyl-transferase family protein (.1) AT5G23940 157 / 1e-42 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT5G42830 148 / 2e-39 HXXXD-type acyl-transferase family protein (.1) AT1G65450 132 / 8e-34 HXXXD-type acyl-transferase family protein (.1.2.3) AT1G03390 128 / 2e-32 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021394 [exp] 839 / 0 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10005360 [exp] 546 / 0 AT2G19070 424 / 9e-146 spermidine hydroxycinnamoyl transferase (.1) Lus10001282 [exp] 537 / 0 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10021393 [exp] 455 / 5e-159 AT2G19070 327 / 5e-109 spermidine hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 290 / 2e-93 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 271 / 4e-86 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10037266 [exp] 268 / 4e-85 AT5G48930 365 / 4e-123 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 266 / 3e-84 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10002321 [exp] 247 / 5e-77 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G109900 [exp] 506 / 6e-178 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.006G165200 [exp] 486 / 3e-170 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 293 / 8e-95 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 292 / 2e-94 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 291 / 5e-94 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 288 / 6e-93 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 288 / 7e-93 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 282 / 1e-90 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.014G166600 [exp] 205 / 8e-61 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 184 / 4e-53 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10005358 pacid=23148517 polypeptide=Lus10005358 locus=Lus10005358.g ID=Lus10005358.BGIv1.0 annot-version=v1.0 ATGGCTACTACTACTTCTATGATCACTTCAAAAAGATACACTAATGTGAAACCGGCCCAACCGACATGGTCCGGCCGGATGCCACTCTCCGAGTGGGACA TGGTCGGCGCGATAACTCATGTGCCCACTGTCTACTTCTATAGGGCCCCACATTTCGGCGTATGGGTTCAGAACGACGATGCAGTTCTGAACCAGCTCAG GGACTCTTTGGCCCAGACCCTGGTCCATTTCTATCCGCTGGCTGGTCGGCTGGAACCTGTCGGAAGTGGCAGGTTCAAGCTGGATTGTAACGCCAGGGGT GTTGAGTTTGTCGTGGCGGAAGCTGAGAGGACGTCACTCGATGACCTAGGCGACGACCTATCGAGCCCCTCTGTCGACCTGCAGCAGTTGATCGTGGAGG TGGACTACACCCTCCCGATAAGCGAGTGGCCGTTGTTGGTTGTTCAGCTTACCAAGTTTAGATGTGGAGGGATTAGCCTTGGGTTCAACATTTCTCATGC TGTCGTGGATGGTCTGAGTGCTCTTCATTTCTTCAATGAGTGGGCACGAGTGGCTCGTGGCGAGGCAATCGGTACGGTGCCATTTCTTGACCGGAAGGTT CTCCGAGCTGGCGAGCCGCCACTTACTAAGCATCCGAGGTTTGATCCTGCCGAGTTCGAACGGCCGCCGGTGCTTCTCCCCGATGCCGGTTCCTCCAATA ACAAAGGTAATGGAGCAAACCACCCGACCAGAGTGGAGAAACTGAAACTAACAAAGACCAAAGTCCAAATGTTAAAGGATATGGCCAACGAGAGCAAGAG TCTGACATTTAAACGTCCATACACGACGTACGAAACCCTAACGGCTCACGTATGGAAGTGCGCATGCAAAGCGCGAAACCTCAAGTCCGACCAGCAAACA GCAGTGGGCGTATGCATAGACTCACGCAGACGCCTAAATACTCCTCTTCCGGACGCGTACTTTGGGAACGCAGTCCTGGACGTAAAGGCTGTGGCCTACA CCGGTGACCTTATAACAAGGTCCCTAGGGTACGCAGCCCAGAAGATAAGGAAGGCGGTAGAGAAGGTCGATAGCGAGTTTTTAAACTCGGCCATCGATTA CTTAAAGAACCAACCGGACTTGACCGAATTCCAAGACTTCCATGAGGATGGTGTTGGTGATGATGGTCCGTTCTTCGGGATGCCGAACTTGGGAGTGATT AACTGGCTGAGGCTGCCCCTTCTCGGGTTGGATTTCGGGTTCGGGAAGGAGGCTTACATGGGTTCGACCCACGAGTTCGACGGGGACACGATGTTGATCC AAAGTCAAGATGGGGATGGCTCGATAGTGCTTGCGATTTGCTTGAGGGCTGACCATATGGATGCTTTCAAACGATGCTTCTACGATGATATTATGTAG
AA sequence Show only first row Show all	>Lus10005358 pacid=23148517 polypeptide=Lus10005358 locus=Lus10005358.g ID=Lus10005358.BGIv1.0 annot-version=v1.0 MATTTSMITSKRYTNVKPAQPTWSGRMPLSEWDMVGAITHVPTVYFYRAPHFGVWVQNDDAVLNQLRDSLAQTLVHFYPLAGRLEPVGSGRFKLDCNARG VEFVVAEAERTSLDDLGDDLSSPSVDLQQLIVEVDYTLPISEWPLLVVQLTKFRCGGISLGFNISHAVVDGLSALHFFNEWARVARGEAIGTVPFLDRKV LRAGEPPLTKHPRFDPAEFERPPVLLPDAGSSNNKGNGANHPTRVEKLKLTKTKVQMLKDMANESKSLTFKRPYTTYETLTAHVWKCACKARNLKSDQQT AVGVCIDSRRRLNTPLPDAYFGNAVLDVKAVAYTGDLITRSLGYAAQKIRKAVEKVDSEFLNSAIDYLKNQPDLTEFQDFHEDGVGDDGPFFGMPNLGVI NWLRLPLLGLDFGFGKEAYMGSTHEFDGDTMLIQSQDGDGSIVLAICLRADHMDAFKRCFYDDIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005358 [exp]	0	1
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Lus10025427 [exp]	2.4	0.9726
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	4.6	0.9818
AT1G21326			VQ motif-containing protein (....		Lus10012286 [exp]	5.3	0.9792
AT1G17860			Kunitz family trypsin and prot...		Lus10042301 [exp]	8.2	0.9747
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016178 [exp]	8.4	0.9678
AT1G17860			Kunitz family trypsin and prot...		Lus10030354 [exp]	8.8	0.9532
AT2G27410	B3		Domain of unknown function (DU...		Lus10027286 [exp]	9.6	0.9505
AT1G17860			Kunitz family trypsin and prot...		Lus10039163 [exp]	10.4	0.9780
AT4G23690			Disease resistance-responsive ...		Lus10024715 [exp]	12.4	0.9740
					Lus10030774 [exp]	14.3	0.9539

Compare expression of checked genes

Lus10005358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.