Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19070 424 / 9e-146 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G48930 265 / 4e-84 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 239 / 5e-74 HXXXD-type acyl-transferase family protein (.1) AT5G41040 180 / 2e-51 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 179 / 5e-51 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 171 / 5e-48 HXXXD-type acyl-transferase family protein (.1) AT5G23940 147 / 5e-39 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT5G42830 138 / 7e-36 HXXXD-type acyl-transferase family protein (.1) AT1G27620 135 / 6e-35 HXXXD-type acyl-transferase family protein (.1) AT5G07080 134 / 1e-34 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021393 [exp] 729 / 0 AT2G19070 327 / 5e-109 spermidine hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 571 / 0 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10021394 [exp] 560 / 0 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10001282 [exp] 454 / 1e-156 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 285 / 1e-91 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10037266 [exp] 266 / 2e-84 AT5G48930 365 / 4e-123 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 254 / 6e-80 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 254 / 8e-80 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10002321 [exp] 249 / 1e-77 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G109900 [exp] 455 / 9e-158 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.006G165200 [exp] 448 / 3e-155 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 295 / 1e-95 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 289 / 4e-93 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 283 / 5e-91 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 281 / 4e-90 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 281 / 4e-90 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 273 / 6e-87 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.014G166600 [exp] 191 / 2e-55 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 176 / 7e-50 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10005360 pacid=23148509 polypeptide=Lus10005360 locus=Lus10005360.g ID=Lus10005360.BGIv1.0 annot-version=v1.0 ATGGTGAAACCGGCCGGACCCACTTGGACAGGACGGATGCCACTATCTGAGTGGGACATGACAGGGTCTATGAATCATGTGGACACCCTGTATTTCTACA GGAGTCCAAAGAACAGTGCGATTAATCAGGCCGTTGGCCGGGTCATGGACTCACTAAGCCGGACCCTGGTCCACTTTTATCCCATGGCTGGCCGACTGGA GCCGGTGGGCGATGGGGGTAGGTTAGAGCTGGAGTGCAATGGTGAAGGGGTCATGTTCATCGAGGCGGTGGCTGAAACGACGTCGCTGGATGAGTTGGGA GACAGTGGTACTGGGGGTGTTGCTGGGGCCGTCGTCATGTCCGGTTGCAGTAACAGTGATTTTCAGCCGTTGATTCCGAACGTGGACTATACTCGTCCCA TCAGCGAGTGGCCGTTGTTGCTGGTCCAGCTCACTGAGTTCAGCTGCGGCTCGTTGAGCTTGTGCTTCTACATGTCTCATGTCGTGGCGGATGGCCTGAG CGCGTTTCATTTCTTAAACGAGTGGGCCCGCATCACTCGTGGTGAAAGAATCGGTACGGTGCCGTTTCTTGATCGGAAGGTTCTCCGGGCTGGAGAACCC CCGGTTAGTATGCAACCTCCTTTGTTCGATCCTGTCGAGTTCCAACGCCCGCCCATGCTTTTTCCCGATGACACGAATCCAAATGGAAAATTAATTGAAG GGAGATACAAAGAGACAAATTTTTTGATATTAAAGCTAACAAAGGCCAAGCTCCAAATGTTGAAAGACACGGTAGACGAGGGGAATAGTTTGATAACGGC GTCAGAACACCGCCCTTATACCACCTACGAAACCCTAACGGCACACACTTGGAGGTGTGCTTGCAAGGCAAGGAAACTAAAACCCGACCAATTAACCGCA GTTGACGTCTGCGTTGACTCGCGCAGACGCGCCAACCCGCCATTGCCAGAGGCATATTTTGGGAACGTGATCCTCGACGTCAAGGCAGTAGGACGTTCGG GGGACATCGTGTCAAAACCATTGGGGTTTGCTGCGGAGAAAGTAAGGAAAGCAATTGAGAAAGTGGACCACGAGTATTTAAGCTCGGCCATCGAGTACTT GAAGAACGAGCCGGATTTAGCCAAGTTTCAAGACTTCTATGATGGCGATAATGGTGATGGTGATGAAGAGCCATGGTTCGGGAATCCGAACCTAGGTGTG ACTAGCTGGCTCTGGCTGCCGATGCAGGGGCTAGATTTTGGGTTCGGGAAGGAGGTTTACATCGGTACGAGGTATGACTTCGATGGTGACACGACGATGT CACGAAGTCGAGATGGGGATGGTACAGTTTTGGTTTCGATTTGCTTGAGGATCGACCATATGGAGGATTTTGAGCACTACTTCTACAACGATATTGTCTA A
AA sequence Show only first row Show all	>Lus10005360 pacid=23148509 polypeptide=Lus10005360 locus=Lus10005360.g ID=Lus10005360.BGIv1.0 annot-version=v1.0 MVKPAGPTWTGRMPLSEWDMTGSMNHVDTLYFYRSPKNSAINQAVGRVMDSLSRTLVHFYPMAGRLEPVGDGGRLELECNGEGVMFIEAVAETTSLDELG DSGTGGVAGAVVMSGCSNSDFQPLIPNVDYTRPISEWPLLLVQLTEFSCGSLSLCFYMSHVVADGLSAFHFLNEWARITRGERIGTVPFLDRKVLRAGEP PVSMQPPLFDPVEFQRPPMLFPDDTNPNGKLIEGRYKETNFLILKLTKAKLQMLKDTVDEGNSLITASEHRPYTTYETLTAHTWRCACKARKLKPDQLTA VDVCVDSRRRANPPLPEAYFGNVILDVKAVGRSGDIVSKPLGFAAEKVRKAIEKVDHEYLSSAIEYLKNEPDLAKFQDFYDGDNGDGDEEPWFGNPNLGV TSWLWLPMQGLDFGFGKEVYIGTRYDFDGDTTMSRSRDGDGTVLVSICLRIDHMEDFEHYFYNDIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005360 [exp]	0	1
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10010054 [exp]	1.0	0.8163
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024256 [exp]	4.2	0.7197
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10027046 [exp]	4.5	0.7332
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10025536 [exp]	4.9	0.6928
AT1G17930			Aminotransferase-like, plant m...		Lus10004830 [exp]	6.8	0.7834
AT2G15220			Plant basic secretory protein ...		Lus10019803 [exp]	7.5	0.7629
AT3G05950			RmlC-like cupins superfamily p...		Lus10041900 [exp]	8.5	0.6925
AT5G15110			Pectate lyase family protein (...		Lus10033018 [exp]	8.8	0.7683
AT1G48120			hydrolases;protein serine/thre...		Lus10008255 [exp]	16.3	0.7153
AT5G27260			unknown protein		Lus10007175 [exp]	27.9	0.6173

Compare expression of checked genes

Lus10005360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.