Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) AT4G15390 175 / 1e-49 HXXXD-type acyl-transferase family protein (.1) AT3G30280 161 / 2e-44 HXXXD-type acyl-transferase family protein (.1) AT1G24430 155 / 2e-42 HXXXD-type acyl-transferase family protein (.1) AT5G47950 153 / 1e-41 HXXXD-type acyl-transferase family protein (.1) AT1G24420 150 / 2e-40 HXXXD-type acyl-transferase family protein (.1) AT5G47980 142 / 1e-37 HXXXD-type acyl-transferase family protein (.1) AT5G23970 129 / 5e-33 HXXXD-type acyl-transferase family protein (.1) AT4G15400 123 / 1e-30 HXXXD-type acyl-transferase family protein (.1) AT5G41040 99 / 4e-22 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021392 [exp] 519 / 0 AT3G26040 184 / 6e-53 HXXXD-type acyl-transferase family protein (.1) Lus10021387 [exp] 490 / 2e-171 AT3G26040 206 / 3e-61 HXXXD-type acyl-transferase family protein (.1) Lus10026013 [exp] 483 / 2e-168 AT3G26040 194 / 5e-57 HXXXD-type acyl-transferase family protein (.1) Lus10021391 [exp] 449 / 2e-155 AT3G26040 191 / 2e-55 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 392 / 3e-133 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1) Lus10036042 [exp] 271 / 2e-88 AT4G15390 151 / 1e-42 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 263 / 6e-83 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 244 / 2e-75 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 242 / 8e-75 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034300 [exp] 276 / 7e-88 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 273 / 1e-86 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 268 / 5e-85 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 268 / 9e-85 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 268 / 9e-85 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 267 / 1e-84 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 266 / 5e-84 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 261 / 2e-82 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 261 / 2e-82 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 251 / 3e-78 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10005361 pacid=23148524 polypeptide=Lus10005361 locus=Lus10005361.g ID=Lus10005361.BGIv1.0 annot-version=v1.0 ATGGAAGTTTCCATCATTTCAAAACAATGTGTTAAGCCATCAAAACTCACCATGCAGCCTCCATTAAAGCTCAACCTACTTGATCAGCTAACTCCCTCCA CCTACTCCCCACTCATACTCTTCTACCAAAACAACGGCAACATCTCCGGCCACGCCTCTAACCAGCTGAAATGGTCCCTCTCCGAAACCCTATCCGACTA CTACCCGCTGGCCGGTAGGATTAGAGACAACTTCGCCATCCACGACTTCAACGAAGGGGTGCCTTTCGTGGAAGCCCGGGTCAGCTGCCACTTGTCAGAC TTCCTTCGCGATCAGGGATCTCGAAGCGATGGAGTGGAACTACTTGACAGCCTCCTCCCTTTACGCGTGGAGCGTCTGGTCCCAGACGCCAGTCCGCAGG TCGTGGTGCAGGTGAACGTGTTTGAATGTGGAGGGCTGGCGCTGGGGTTGTGCTTCTTGCACAAGAGCCACGATGGGGCCGTGGCGGACTCTTTCCTGAG AAGTTGGGCAACGACGAATAAAAACGTCGCCCATCGTAAAGTTATAAAGCCGAATTTTTCAGAAGGCGTGTTGACTTTTCCTCCGGTGAAGTCATTACCT TCCGAGTACACATCCCTCGTGGAAGGGATGTGGTTCGGGAGCAAAGGAAACCCGGTGACTAGGAGGTTCGTATTTGACACCGACTCAATTTCCAAACTAA GGCTGGAGGCCAGCAGCCAGACCCTAGAGAACCCAACTAGGGCCGACGCAGTCTCAGCCTTCATTTGGAAATCTATCATATCTGCCACAGCATCTACCTC TGCCTCGTCATTACATAACCTAAATAGCAACAACTACTCGTCAGTGTTGTCACAGACAGTGAACATGAGGGGGCTAACAAGGCCACGTCTGTCTAAACAC TCATTCGGGAATCTGATTCTTTACTCGGATTCTGTTTACAACCCGAGAATCAACAACCAACCCAGATTGGATTATCTGGCTGGGCTGGTTAGGAATGGGG TAACCGAAATGAACAGCGAGCTCTTGGCAGAGTTTGTCGGAGAAAGTGGGACGAAAGCCATATTCAACTACTGCAATCAGCTGATGTTGGAGATGATTAG CGAGGACGAAAAGGCGGGGGACAAACTGACCGTGTCGTGCTTGCATGGGTTCAGAATGAGTAAGATTGATTTCGGGTGGGGACCTACGGTTTGGGTTACT AGGAGTGGACCAGGAGGAGCTTCAAAAGGAGAAGAAAACGACTCCGTTTTCTATACTAAAGATATGGTTATTTTGGTGGAGAATAACCATGGCGGGTTAG AAGCTTGGTTGACCCTTCAGGAACCAGCTGTTATGACGGCCCTCGAGATGGATCCGGAGTTTCTCGAATTTGCTTATATAAAATTTAGTATTCTACAGGA ATGA
AA sequence Show only first row Show all	>Lus10005361 pacid=23148524 polypeptide=Lus10005361 locus=Lus10005361.g ID=Lus10005361.BGIv1.0 annot-version=v1.0 MEVSIISKQCVKPSKLTMQPPLKLNLLDQLTPSTYSPLILFYQNNGNISGHASNQLKWSLSETLSDYYPLAGRIRDNFAIHDFNEGVPFVEARVSCHLSD FLRDQGSRSDGVELLDSLLPLRVERLVPDASPQVVVQVNVFECGGLALGLCFLHKSHDGAVADSFLRSWATTNKNVAHRKVIKPNFSEGVLTFPPVKSLP SEYTSLVEGMWFGSKGNPVTRRFVFDTDSISKLRLEASSQTLENPTRADAVSAFIWKSIISATASTSASSLHNLNSNNYSSVLSQTVNMRGLTRPRLSKH SFGNLILYSDSVYNPRINNQPRLDYLAGLVRNGVTEMNSELLAEFVGESGTKAIFNYCNQLMLEMISEDEKAGDKLTVSCLHGFRMSKIDFGWGPTVWVT RSGPGGASKGEENDSVFYTKDMVILVENNHGGLEAWLTLQEPAVMTALEMDPEFLEFAYIKFSILQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10005361 [exp]	0	1
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011883 [exp]	2.2	0.8720
AT5G57500			Galactosyltransferase family p...		Lus10025474 [exp]	4.5	0.7897
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10022385 [exp]	8.0	0.7947
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10003110 [exp]	9.2	0.8026
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	14.5	0.7831
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033898 [exp]	17.7	0.8267
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021391 [exp]	18.5	0.7745
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009029 [exp]	20.3	0.8176
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10000737 [exp]	20.6	0.7770
AT2G45220			Plant invertase/pectin methyle...		Lus10027206 [exp]	25.1	0.7655

Compare expression of checked genes

Lus10005361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.