Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29635 263 / 5e-83 HXXXD-type acyl-transferase family protein (.1) AT3G29590 257 / 1e-80 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39090 248 / 2e-77 HXXXD-type acyl-transferase family protein (.1) AT5G39080 244 / 1e-75 HXXXD-type acyl-transferase family protein (.1) AT5G39050 239 / 1e-73 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29670 236 / 1e-72 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G61160 226 / 8e-69 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 213 / 1e-63 HXXXD-type acyl-transferase family protein (.1) AT1G03495 212 / 2e-63 HXXXD-type acyl-transferase family protein (.1) AT1G03940 209 / 4e-62 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020514 [exp] 764 / 0 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 576 / 0 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 554 / 0 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 521 / 0 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 365 / 5e-122 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 352 / 3e-117 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 332 / 2e-108 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 291 / 2e-93 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 287 / 4e-92 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 387 / 7e-131 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 375 / 1e-126 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 369 / 1e-123 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 343 / 9e-114 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 343 / 1e-113 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 341 / 6e-113 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 341 / 8e-113 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 333 / 7e-110 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 322 / 2e-105 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 322 / 2e-105 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10005362 pacid=23148525 polypeptide=Lus10005362 locus=Lus10005362.g ID=Lus10005362.BGIv1.0 annot-version=v1.0 ATGTCAACAACTCGAGCTGTGGAGGTATGTCAGGTAGCTCCGTCGCCACTACCGACCTCTGATTTCTCTCTACCGCTCACTTTATTCGACACCTTCTGGC TCAAATTTGCCCCCGTGGAACGAATCTTCTTCTACCGTCTCCCTTCCTCCACCTCCTCCAAAGATGACGTCAACATCCCCCGGCTGAAGCGCTCTCTCTC GGTCGCCCTCCGCCACTTCCTCCCGCTCGCCGGGAAACTCACCTGGCCGGAACACGCCGACGTCCCCTTCGTCCTCTACTCGTCTCCAAACGACGCCGTT TCACTAACCATCGCCGAGTCAACGGACGACGATATCTTCGACCTCCTTTCAAGAGATGGGCCCCGCGACGCTAGCATGTCGCGAGCTTATGTGCCGAAGC TCGAAGTTTCGGGGTCCAACGCTGCCGTTTTGGCCCTGCAGGTTACGGTGTTCCCCGGTCACGGGTTCTGCGTGGGCGTCACTTCACATCACGGCGTTCT CGACGGGAAGAGCTCCGTAATGTTTATGAAAGCGTGGGCGCATTTTAGCAAGGGGTTGGGTGACGGTAACGGAGGGGAATTGATGATGGAGGCGCTGACT CCGTTTCTTGATCGGACGACTGTCAATGATCCGGATGGGATTGCTTTGGAAGACGTGAAGGCTTGGACGGCGGTGAATAACGCCATGAATACTTCTATGA GAAGTTTGGAGCTTATGTCGGATATTGTTCCTCCGGCGAGCAGATCGAATCAGGTACGAGGGACATTCAAGTTGTCACGAAAAGACATCAACCAACTCAA GAAAACCGTACAACACCAACTCGAAACGGTTGAAAACCACGACAATAACCAAGCAACCGAACCAAGAAACTTATCAACTTTTGTTGTAACCTTGGCGCAC ACATTGGTGTGCATGGCTAAAGCGAAAGAGCTGGACGACGACAAGGATGCGATATTCGGGTTCACGGCCGACTGTAGGTCGCGTTTGGACCCACCGTTGC CGGAGAACTACTTTGGGAACTGCGTCATGGGCTTTCCGGCTCCCGCCATGAAGATCGGAGATCTGGTGCACGACGGCGGGATAGCACGAGTGGCTCGCAA CGTTATCGAGTTGATAAAGAAGGTGGATCACAATGCTCTCGAGGGAGCCAAGGGGAAGCTAGGAAGGATCATGCATTTGGCTTCAAAGAAAGAGGAGGGG CTCATCGGGGTCGGTGTGGCCGGGTCACCTCGACTCGGGGTTTACAATGTCGATTTTGGGTTCGGTAGGCCGGAAAAGGTGGAGGTGACGTCAATAGATA GAACTTCGGCAATATCGATGGCGGAGAGCAGCAACGGAAGTGGTGGCGTAGAAGTTGGTGTGGTCATGTTGAGGCATGAGATGGACAAGTTTGCCTCTTA A
AA sequence Show only first row Show all	>Lus10005362 pacid=23148525 polypeptide=Lus10005362 locus=Lus10005362.g ID=Lus10005362.BGIv1.0 annot-version=v1.0 MSTTRAVEVCQVAPSPLPTSDFSLPLTLFDTFWLKFAPVERIFFYRLPSSTSSKDDVNIPRLKRSLSVALRHFLPLAGKLTWPEHADVPFVLYSSPNDAV SLTIAESTDDDIFDLLSRDGPRDASMSRAYVPKLEVSGSNAAVLALQVTVFPGHGFCVGVTSHHGVLDGKSSVMFMKAWAHFSKGLGDGNGGELMMEALT PFLDRTTVNDPDGIALEDVKAWTAVNNAMNTSMRSLELMSDIVPPASRSNQVRGTFKLSRKDINQLKKTVQHQLETVENHDNNQATEPRNLSTFVVTLAH TLVCMAKAKELDDDKDAIFGFTADCRSRLDPPLPENYFGNCVMGFPAPAMKIGDLVHDGGIARVARNVIELIKKVDHNALEGAKGKLGRIMHLASKKEEG LIGVGVAGSPRLGVYNVDFGFGRPEKVEVTSIDRTSAISMAESSNGSGGVEVGVVMLRHEMDKFAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10005362 [exp]	0	1
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	1.4	0.9728
					Lus10026081 [exp]	2.0	0.9713
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016469 [exp]	3.0	0.9716
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	3.2	0.9722
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016470 [exp]	4.1	0.9531
AT3G55470			Calcium-dependent lipid-bindin...		Lus10040291 [exp]	4.2	0.9509
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	4.9	0.9677
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019991 [exp]	5.2	0.9644
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10012223 [exp]	5.2	0.9466
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	5.3	0.9661

Compare expression of checked genes

Lus10005362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.