Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53030 611 / 0 SRPK4 ser/arg-rich protein kinase 4 (.1) AT3G44850 610 / 0 Protein kinase superfamily protein (.1) AT5G22840 595 / 0 Protein kinase superfamily protein (.1) AT4G35500 453 / 9e-157 Protein kinase superfamily protein (.1.2) AT2G17530 442 / 2e-152 Protein kinase superfamily protein (.1.2.3) AT4G32660 102 / 1e-23 AME3 Protein kinase superfamily protein (.1.2.3) AT1G73450 104 / 3e-23 Protein kinase superfamily protein (.1) AT1G73460 103 / 4e-23 Protein kinase superfamily protein (.1) AT4G24740 102 / 4e-23 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT5G35980 100 / 8e-22 YAK1 yeast YAK1-related gene 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020516 [exp] 876 / 0 AT3G53030 647 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10005363 [exp] 753 / 0 AT3G44850 681 / 0.0 Protein kinase superfamily protein (.1) Lus10020515 [exp] 740 / 0 AT5G22840 684 / 0.0 Protein kinase superfamily protein (.1) Lus10016690 [exp] 455 / 2e-157 AT4G35500 683 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035984 [exp] 454 / 1e-156 AT4G35500 694 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031328 [exp] 100 / 4e-24 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10019458 [exp] 102 / 5e-23 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10025301 [exp] 100 / 1e-22 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10042297 [exp] 101 / 2e-22 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151500 [exp] 647 / 0 AT3G44850 735 / 0.0 Protein kinase superfamily protein (.1) Potri.004G190400 [exp] 637 / 0 AT3G44850 769 / 0.0 Protein kinase superfamily protein (.1) Potri.006G117800 [exp] 620 / 0 AT3G53030 740 / 0.0 ser/arg-rich protein kinase 4 (.1) Potri.007G063100 [exp] 459 / 5e-159 AT2G17530 679 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G102100 [exp] 456 / 5e-158 AT2G17530 703 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G244400 [exp] 103 / 1e-23 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G043400 [exp] 101 / 2e-22 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.015G085700 [exp] 100 / 2e-22 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 99 / 4e-22 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.015G033400 [exp] 100 / 6e-22 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005364 pacid=23148518 polypeptide=Lus10005364 locus=Lus10005364.g ID=Lus10005364.BGIv1.0 annot-version=v1.0 ATGGCGGAGGCCGGCACCGGAGACCGCAGCGAGCTGAGCGACTACTCCTCTTCCTCCTCATCGGAAGACGAAGGATCTGAGGAGTACAGGAGAGGCGGAT ATCATCCTGTCCGGATCGGCGACTCCTTCAGGAACGGACGATACGTTGTTCAGAGCAAGCTTGGCTGGGGCAACTTCTCCACTGTCTGGCTAGCTTGGGA CACTCAAGGATCTGGTTATGTAGCTCTGAAAGTTCAAAAGAGTGCTCAAAACTTTACCGAGGCGGCCATGGGCGAGATAGAGCGATTGAATCAGATTGCA GAAGGAGATCCAGATGATAAGTATGGCTGTGTCAAGCTTTTGGATCATTTCAAGCATTCGGGGCCGAATGGACAGCACGTCTGTATGGTTTTCGAGTACT TAGGGGATAACTTGTTAACACTTATTAAGTACAGTGACTACAAAGGTGTTCCTTTGAGCAAGGTGAAAGAGTTATGCTATCACATTCTTGTGGGGTTAGA TTACTTGCACCGCAAACTTTCAATCATCCATACTGATTTGAAGCCGGAGAATGTCCTCCTCTCCTCGACCATCGATCCTTCTAAGGATCATAGGAAGACC GGCGCTCCTTTGATCCTCCCGACCAGCAAGGATAAACTCGTGAGTGAGTCTTTGTCTTCTTTGATAGAGACGTGTAAGACTTCGAGTGGGGGGTTAATAA AGAACCATAAAGAGAAGATAAGGAAGAAGGTTAAGAAGTCGGGTCTGGATTGTAGCGATAGAGAAGAGTTGGAAGAGATTGAAGCTAATGAGAGAAATCG TGAGGGCTCGTCAAGTCTTGATACTAAACGGCATGATGATCATAGAAAGGGGAAGCGAGCTGCAAAGAGGAAGCTATTGGATTCTGCGGATCTGAGTTGC AAGTTGGTCGATTTTGGGAATGCGTGTTGGACGTACAAACAGTTTACGAGTGACATCCAGACGAGGCAGTATCGGTGTCCTGAGGTCATCCTTGGAACGA AATACTCGACACCGGCAGATCTATGGTCGTTGGCTTGTATTTGCTTCGAACTTGCTACTGGTGACGTCCTTTTCGATCCTCACAATGGCGACAACTATGA CCGGGATGAGGATCATTTAGCATTGATGATCAAGCTTCTCGGCGTGATGCCTCGTAAGATATCGTTGGGTGGTCGGAATTCGAAGGACTTCTTCAACAAG TATGGAGACCTGAAGCACATCCGCAGGTTACGTTTCTGGCCTCTTCGCAAAGTGCTCAACGAAAAGTACGGTTTCAGCGAGCAAGATGCACAAGAGATGG CCGATTTCTTATTACCCTTACTCGAATATGCACCGGAAAAGCGGCCGACTGCTGCTGATTGCCTTAACCATCCGTGGATCCTTTCGTCTCCTCATCTCCT GAAGCCTTCACCTGCGGCTCTTCCCACCTTGGAGAAGAAGACCAAGGACGAGAGGGAAGCCATGGAAGCTGGAGTAAAGAAGATAACCATCAATGGCACC TCGATTTCGTCTCCTCGGCCCTTGAAAAAGTAA
AA sequence Show only first row Show all	>Lus10005364 pacid=23148518 polypeptide=Lus10005364 locus=Lus10005364.g ID=Lus10005364.BGIv1.0 annot-version=v1.0 MAEAGTGDRSELSDYSSSSSSEDEGSEEYRRGGYHPVRIGDSFRNGRYVVQSKLGWGNFSTVWLAWDTQGSGYVALKVQKSAQNFTEAAMGEIERLNQIA EGDPDDKYGCVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYKGVPLSKVKELCYHILVGLDYLHRKLSIIHTDLKPENVLLSSTIDPSKDHRKT GAPLILPTSKDKLVSESLSSLIETCKTSSGGLIKNHKEKIRKKVKKSGLDCSDREELEEIEANERNREGSSSLDTKRHDDHRKGKRAAKRKLLDSADLSC KLVDFGNACWTYKQFTSDIQTRQYRCPEVILGTKYSTPADLWSLACICFELATGDVLFDPHNGDNYDRDEDHLALMIKLLGVMPRKISLGGRNSKDFFNK YGDLKHIRRLRFWPLRKVLNEKYGFSEQDAQEMADFLLPLLEYAPEKRPTAADCLNHPWILSSPHLLKPSPAALPTLEKKTKDEREAMEAGVKKITINGT SISSPRPLKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10005364 [exp]	0	1
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10003738 [exp]	2.0	0.8466
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	3.0	0.8608
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10018412 [exp]	3.2	0.7933
AT1G80630			RNI-like superfamily protein (...		Lus10041648 [exp]	4.9	0.7649
AT1G75810			unknown protein		Lus10033134 [exp]	9.2	0.8098
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028075 [exp]	10.0	0.8091
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10038582 [exp]	12.0	0.7785
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10037882 [exp]	13.0	0.8083
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	14.6	0.8107
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	19.4	0.7782

Compare expression of checked genes

Lus10005364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.