Plant FIBer expression Database

Lus10005366 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22820 285 / 7e-92 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020518
[exp]
566 / 0 AT5G22820 436 / 2e-149 ARM repeat superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G151100
[exp]
350 / 1e-116 AT5G22820 499 / 4e-173 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10005366 pacid=23148519 polypeptide=Lus10005366 locus=Lus10005366.g ID=Lus10005366.BGIv1.0 annot-version=v1.0
ATGGCTTTGAATTCAATTTCAAACCCGCTAGAAGACGAACAAAACGAACGAGATTATTTCGAACAGCGCGAAGAAGAAGAAGAAGAAGCAGAAGAAGATG
CCATAAGAGAAGACGAATCAGCCGATCGACCTTCGCATCACCCTTCCCCACCACCTGACGAGCTTTTCGATTTATCGACTACAGTTGATCCGACATACAT
AATCTCGTTGATAAGAAAGCTTGTTCCAGTAGATGCTAGGAAGGAGGGGAGCCGTCAATCTGGTGGTAATAATGGTATTAAAGGAGGTTCATCCAATGGC
TACATGGATGAGAATGGAGCTTTGCTTTCTCTGGAACGAGGCTTGGACCAAGCTGGCAATAATGAGCATGAGAACATGGACATTGTTGCTGACGAATCAG
AGGTTTCGCAGGCAGATGATGTATGGGAAGAGCATGGTTGTGTCTTGTGGGATCTTGCTGAAGTGCAGAATCTTGTACTTGAAGTGCTTTCAGCTAACCT
GACAGTAACCCGATCAGTTCGTGTGAAGGAGATTTGCCTTGGTATCATTGGGAATCTTGGATGTCACAATCTCCCTATGATGCACATCGTCTCCAAAGAA
GAGCTAATTAGGATTATTCTCGATCAACTGTTTCTTGATGATCCTCAGTGCCTGAGTGAAGCTTTTTGGATCTTAACTTTGGGTCTCCAGAGTGGAGAAT
CTGGTACTTGGGGAGAGGCATTTGAGGCTGATCACATCCTGTCTAGAATTACATGGGTTTCAGAAAACACCTTAAATCCTCAGCTTTTAGGAAAGAGTGT
GGAATTCTTGCTAGCTGTTCTCCAAAGTAGAGAGGAAGTGTCAAGTTCCCGTATTCCACCTCTCATGAAGCTAGGCTTGCTGTCTGCTGTGGACGTAATT
CTTCGTGCAATTGAGGCTCTTTCCTCTCTAGATGTTCATTCCCAAGAAATTTGTTCGGACAAGACTCTATTTCGACTAGTTTGCGATGTAATCAAGATTC
CAGACAAGGCAGAGATTGCCAATTCGTGCGTTACCGCTGCAGTTTTACTCGCGAACATGCTTGCTGATGTGCCTGATCTGGCCTCAGAGATGTCCCAGGA
TTTATCTTTGCTGGAGAGTCTATTGGACATATTTCCATTCACCTCTGACGATCCCGAGGCACGTAGTGCACTCTGGAGCACCAAGCTGGACTGCTGGTCA
AAGTCAACGAAACCGAGCTGA
AA sequence
>Lus10005366 pacid=23148519 polypeptide=Lus10005366 locus=Lus10005366.g ID=Lus10005366.BGIv1.0 annot-version=v1.0
MALNSISNPLEDEQNERDYFEQREEEEEEAEEDAIREDESADRPSHHPSPPPDELFDLSTTVDPTYIISLIRKLVPVDARKEGSRQSGGNNGIKGGSSNG
YMDENGALLSLERGLDQAGNNEHENMDIVADESEVSQADDVWEEHGCVLWDLAEVQNLVLEVLSANLTVTRSVRVKEICLGIIGNLGCHNLPMMHIVSKE
ELIRIILDQLFLDDPQCLSEAFWILTLGLQSGESGTWGEAFEADHILSRITWVSENTLNPQLLGKSVEFLLAVLQSREEVSSSRIPPLMKLGLLSAVDVI
LRAIEALSSLDVHSQEICSDKTLFRLVCDVIKIPDKAEIANSCVTAAVLLANMLADVPDLASEMSQDLSLLESLLDIFPFTSDDPEARSALWSTKLDCWS
KSTKPS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G22820 ARM repeat superfamily protein... Lus10005366
[exp]
0 1
AT2G31050 Cupredoxin superfamily protein... Lus10039842
[exp]
1.4 0.9142
AT3G42660 transducin family protein / WD... Lus10021720
[exp]
7.2 0.9207
AT1G79890 RAD3-like DNA-binding helicase... Lus10037548
[exp]
10.4 0.9030
AT5G67100 ICU2 INCURVATA2, DNA-directed DNA p... Lus10019338
[exp]
16.6 0.9011
AT5G49830 EXO84B exocyst complex component 84B ... Lus10024928
[exp]
17.9 0.8438
AT5G19330 ARIA ARM repeat protein interacting... Lus10042583
[exp]
22.8 0.9007
AT1G78160 APUM7 pumilio 7 (.1) Lus10041139
[exp]
23.2 0.8299
AT4G01575 serine protease inhibitor, Kaz... Lus10010094
[exp]
24.1 0.7995
AT4G14368 Regulator of chromosome conden... Lus10030999
[exp]
29.7 0.8718
AT1G65470 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10008729
[exp]
29.9 0.8912

Lus10005366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.