Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10050 677 / 0 OMR1 L-O-methylthreonine resistant 1 (.1) AT4G11640 111 / 1e-26 ATSR serine racemase (.1) AT2G43750 47 / 3e-05 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G61440 44 / 0.0003 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023884 [exp] 702 / 0 AT3G10050 838 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10014390 [exp] 701 / 0 AT3G10050 845 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10027728 [exp] 682 / 0 AT3G10050 787 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10008490 [exp] 122 / 3e-30 AT4G11640 489 / 3e-175 serine racemase (.1) Lus10020520 [exp] 97 / 2e-22 AT3G10050 94 / 5e-23 L-O-methylthreonine resistant 1 (.1) Lus10019003 [exp] 45 / 9e-05 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10015947 [exp] 45 / 0.0001 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10027056 [exp] 42 / 0.001 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118400 [exp] 736 / 0 AT3G10050 869 / 0.0 L-O-methylthreonine resistant 1 (.1) Potri.001G106000 [exp] 103 / 8e-24 AT4G11640 460 / 9e-164 serine racemase (.1) Potri.008G153300 [exp] 44 / 0.0002 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.002G160800 [exp] 44 / 0.0002 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.014G086300 [exp] 44 / 0.0004 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.013G035500 [exp] 43 / 0.0004 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048200 [exp] 42 / 0.0009 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1) Potri.005G048700 [exp] 42 / 0.001 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF00585 [flax] [poplar] Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10005369 pacid=23148508 polypeptide=Lus10005369 locus=Lus10005369.g ID=Lus10005369.BGIv1.0 annot-version=v1.0 ATGGCGGCGATGTTCTCCACCACCGTCTGCCCAACTCCCCTCCGCCGCCAGACCAACGAACTTATTAACTTCCCCGCCGCCGCCACTAAACCCAGGACCA CCACCACCACTACCGTCAAACCGATTTCCGCCGCCTTAAACACGGAGAAGTACTCGTACAAAACTGACAGTACCGTTGTCAGAGACGGCTCACACTGCGT CGTGAATAATGCGGGTCCCACACTGAAGCCGACGTTCCCGCCGCCGCTGATGAAGGTGGCGGCGGAGTCGCTGCATTACGATAGTGGGATGTTGGGCGCC GGCCCGGCGAGAGGGGAAGACGGTGGGGTCCACAACGCGATGAGCTACTTGACGAGGATACTGTCGTCGAAAGTGTATGACGTGGCAATCGAGTCGCCGT TGGATGCTGCTCCCATGTTGTCTCAGAGGTTGGGCGTCCACGTTTGGCTCAAGAGAGAGGATCTACAACCTGTTTTCTCGTTCAAGCTTCGAGGAGCTTA TAACATGATGGCGAAGCTAACCGAAGAACAATTAGCCAAAGGAGTCATTTGTTCATCGGCTGGAAACCATGCTCAGGGAGTCGCATTATCTGCTAAGAAA CTGGGATGCGATGCTGTCATTGCTATGCCAGTTACCACGCCTGAAATCAAATGGAAGACGGTGGAGAGATTGGGCGCCACGGTGGTCCTCGTCGGAGAAT CCTACGACGAAACTCAGTCCTACGCCAAGCAGAGAGCCAAGGATGAAGGGAGAATGTTCATCCCACCGTTCGATCACCCTGACGTCATCGCCGGACAAGG CACCATCGGGATGGAGATCGTCAGGCAGATGCCCGGCAATCTGCACGCGATATTCGTCCCCGTCGGCGGAGGCGGTCTAATCGCTGGGATCGCTGCTTAC GTGAAGAGAGTTCGCCCGGAGGTTAAAGTGATTGGCGTGGAGCCGTTCGACGCCAACGCGATGGCGTTATCTCTGCATCACGGACAGAGGATTATGTTGG ATAAGGTCGGAGGTTTTGCCGACGGTGTCGCCGTTAAAGCGGTTGGGGAGGAGACTTTCGGGCTGTGTAAAGAGCTCATCGACGGCGTTGTTCTTGTCAG CCGTGACGCGATCTGTGCTTCAATTAAGGACATGTTTGAGGAGAACAGGAGCATACTTGAGCCAGCAGGGGCTTTAGCCATGGCCGGAGCTGAAGCTTAC TGTACACACTACGGGCTAAAGGGCGAAAACGTGGTAGCGATTACGAGCGGAGCGAACATGAATTTCGACAGACTCGGCCTGGTTTCGCAGCTAGCAGACG TAGGCAGACGATCGGAGGCTGTTCTGGCTACATTCGTGCCGGAGAAGTGGGGGAATTTCATCGAGTTCTATAAACTGGTTGGTGGCATCAACATTACCGA ATTCAGATATCGATACGATGCTCATAAAGATCAGGCTCTCGTCCTTTACAGGCAAGTCAATATAGGTTTTAGCTGGATTTGCGGTCAATTTCGCATGCCC GACCAATTCCGCTGGATTTGGGGCTTAATCTGCCTAATTCCAACCTCTGATTTCCGTTTGAAAAGTGTCAGCTTCAGTACGATGCTCGAGCTCGAGAGGA TGTTGGAGTGGATGAAATCGGCCAATCTCCACACCTTCAATCTCACTGATAACGACCTTGTTAAAGACCATCTTCAATTCTTGGTTGGTGGCCGATCCAA CGTTGAAAACGAAATCCTCTGCCAATTCATCATCCCTGAGACGCCGGGTGCTCTAGGCAAGTTCTTGGACACGTTCAGTGTCCGTTGGAACGTCACATTG TTCCATTATCGCGACCAGGGTGAAAGCAAAGCCAATGTGCTTGTGGGTTTCCAAGTCGCCCCCTCGGAGATGGACGAGTTCAAGTCCTTGGCTAACAGCC TTCGAGTCGACTACAAGTTGGAGATGGAAAACGAGGCGCTCCAACTTCTACTGCACTGA
AA sequence Show only first row Show all	>Lus10005369 pacid=23148508 polypeptide=Lus10005369 locus=Lus10005369.g ID=Lus10005369.BGIv1.0 annot-version=v1.0 MAAMFSTTVCPTPLRRQTNELINFPAAATKPRTTTTTTVKPISAALNTEKYSYKTDSTVVRDGSHCVVNNAGPTLKPTFPPPLMKVAAESLHYDSGMLGA GPARGEDGGVHNAMSYLTRILSSKVYDVAIESPLDAAPMLSQRLGVHVWLKREDLQPVFSFKLRGAYNMMAKLTEEQLAKGVICSSAGNHAQGVALSAKK LGCDAVIAMPVTTPEIKWKTVERLGATVVLVGESYDETQSYAKQRAKDEGRMFIPPFDHPDVIAGQGTIGMEIVRQMPGNLHAIFVPVGGGGLIAGIAAY VKRVRPEVKVIGVEPFDANAMALSLHHGQRIMLDKVGGFADGVAVKAVGEETFGLCKELIDGVVLVSRDAICASIKDMFEENRSILEPAGALAMAGAEAY CTHYGLKGENVVAITSGANMNFDRLGLVSQLADVGRRSEAVLATFVPEKWGNFIEFYKLVGGINITEFRYRYDAHKDQALVLYRQVNIGFSWICGQFRMP DQFRWIWGLICLIPTSDFRLKSVSFSTMLELERMLEWMKSANLHTFNLTDNDLVKDHLQFLVGGRSNVENEILCQFIIPETPGALGKFLDTFSVRWNVTL FHYRDQGESKANVLVGFQVAPSEMDEFKSLANSLRVDYKLEMENEALQLLLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10005369 [exp]	0	1
					Lus10023773 [exp]	7.5	0.9020
AT1G15260			unknown protein		Lus10035880 [exp]	8.2	0.9031
AT4G14740			Plant protein of unknown funct...		Lus10002798 [exp]	17.0	0.8881
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10002084 [exp]	18.2	0.9006
AT1G15260			unknown protein		Lus10025783 [exp]	18.5	0.8479
AT1G06240			Protein of unknown function DU...		Lus10033620 [exp]	20.9	0.8676
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10035864 [exp]	21.8	0.8969
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10002712 [exp]	22.4	0.8943
AT2G42220			Rhodanese/Cell cycle control p...		Lus10021032 [exp]	24.5	0.8963
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10013310 [exp]	24.5	0.8893

Compare expression of checked genes

Lus10005369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.