Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22770 1674 / 0 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 1674 / 0 Adaptor protein complex AP-2, alpha subunit (.1) AT1G23900 284 / 1e-81 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT1G60070 283 / 2e-81 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G31730 206 / 9e-55 Adaptin family protein (.1) AT1G23940 123 / 2e-29 ARM repeat superfamily protein (.1) AT1G48760 94 / 4e-19 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT4G23460 55 / 3e-07 Adaptin family protein (.1) AT4G11380 51 / 5e-06 Adaptin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020522 [exp] 2003 / 0 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10019520 [exp] 1873 / 0 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10043363 [exp] 1864 / 0 AT5G22780 1659 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10012988 [exp] 280 / 2e-80 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10029177 [exp] 276 / 4e-79 AT1G60070 1389 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10030640 [exp] 237 / 5e-65 AT1G60070 1322 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10030848 [exp] 225 / 2e-61 AT1G60070 1288 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10035683 [exp] 196 / 4e-51 AT1G31730 1343 / 0.0 Adaptin family protein (.1) Lus10035684 [exp] 195 / 5e-51 AT1G31730 1312 / 0.0 Adaptin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G189700 [exp] 1785 / 0 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 1763 / 0 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.016G104700 [exp] 281 / 1e-80 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 279 / 9e-80 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G235200 [exp] 201 / 6e-53 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.015G045600 [exp] 108 / 1e-23 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.012G055000 [exp] 105 / 1e-22 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.001G101400 [exp] 60 / 9e-09 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.003G130400 [exp] 55 / 3e-07 AT4G23460 1471 / 0.0 Adaptin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0545 [flax] [poplar] APCOP-app_sub PF02296 [flax] [poplar] Alpha_adaptin_C Alpha adaptin AP2, C-terminal domain CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region CL0159 [flax] [poplar] E-set PF02883 [flax] [poplar] Alpha_adaptinC2 Adaptin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005371 pacid=23148515 polypeptide=Lus10005371 locus=Lus10005371.g ID=Lus10005371.BGIv1.0 annot-version=v1.0 ATGGCGCTTTCAGGCATGAGAGGTCTGTCCGTGTTCATCAGCGACGTTCGTAATTGTCAGAACAAAGAGCAGGAGAGGATTCGTGTTGATAAGGAGCTCG GAAACGTCCGTACTCGCTTCAAAAACGAGAAGGGGTTGAGTCCATACGAGAAGAAGAAATATGTTTGGAAAATGCTTTACATTCACATGCTTGGTTATGA TGTAGATTTTGGTCACATGGAATCCGTTTCCTTAATATCCGCACCAAAATATCCAGAAAAGCAGGTTGGTTATATTGTGACATCATGTTTGCTCAACGAG AACCACGATTTTCTCCGATTAGCTATAAATACTGTACGGAATGACATTATTGGTCGGAATGAAACTTTTCAGTGCCTTGCTTTGACCCTGGTAGGAAATA TTGGTGGAAGAGAATTTGCTGAATCATTGGCAGCTGATGTTCAGAAATTACTTATATCCAGCAGCTGTAGACCTCTTGTAAGAAAAAAGGCTGCTCTGTG TCTGCTGCGCTTGTATAGGAAAAATCCTGATGTTGTGAACGTGGATGGCTGGGCGGATCGTATGGCACAACTCCTAGACGAACGTGATCTTGGTGTGTTG ACATCTTCGATGAGTTTGTTTGTTTCTTTAGTATCGAATAATCATGAAGCATACTGGAGTTGTCTGCCAAAATGTGTGAAAACTTTGGAGCGACTTGCTA GAAATCAAGATATACCCCAAGAATACACTTACTATGGTATTCCATCTCCTTGGCTCCAGGTTAAAACAATGAGGGCTCTTCAATATTTCCCAACAATTGA AGATCCTAATACACGAAGATCTTTATTTGAGGTCTTACAAAGAATATTAATGGGAACTGACGTTGTGAAAAATGTAAATAAGAACAATGCATCTCATGCC GTTCTCTTTGAGGCTCTTGCTCTTGTCATGCATCTTGATGCAGAGAAAGAGATGATGTCTCAATGTGTGGCCCTCCTGGGTAAATTTATTGCTGTCCGGG AACCAAATATTCGATATCTTGGCTTGGAAAATATGACCAGGATGCTGATGGTAACAGATGTGCAAGATATTATTAAAAAACACCAGGCTCAGATTATCAC TTCATTGAAAGATCCTGATATCAGCATTCGTCGGCGCGCTCTTGATCTACTCTATGGCATGTGTGATGTTTCTAATGCAAAGGATATAGTTGAAGAATTA TTGCAGTACCTCAGCTCAGCAGATTTTGCAATGCGTGAGGAATTATCTCTGAAAGCTGCTATCCTTGCGGAGAAGTTTGCCCCTGATCTATCTTGGTATG TGGATGTAATACTTCAGCTGATCGATAAGGCTGGAGATTTTGTTAGCGACGACATATGGTTTCGGGTTGTGCAGTTTGTCACGAACAACGAAGACCTACA GCCTTATGCAGCAGCTAAAGCGAGAGAGTACCTCGACAAACCTGCCATACACGAGACAATGGTCAAGGTCAGTGCATATATCCTGGGAGAGTACGGGCAC CTTTTGGCCAGACGGCCAGGATGCAGTCCAAAGGAATTGTTTATCATCATTCACGAGAAGCAGCCTACTGTTTCTACCTCCACCATCCCAATTCTTCTCT CGACTTATGCTAAAATATTAATGCACACTCAGCCAGCAGACCCGGAACTGCAAAACCAGATCTTTACTATTTTCAACAAATATGAAAGTTGCATTGATGT TGAGATTCAACAACGAGCAGCCGAGTATTTTGCCTTGAGTAGGAAAGGTGCTGCTCTGATGGACATATTGGCTGAAATGCCGAAGTTCCCTGAGCGCCAG TCTGCGTTGATAAGAAAAGCTGAAGATACAGAGGTTGATACCGCGGAACAAAGTGCTATCAAGATGCGGGCGCAGCAACAGATGTCAAATGCCTTGGTGG TAACCGATCAACTCCCTGCCAATGGAACACCATCCCCACCTTCTGTAGGCCAACTTAGTCTGGTCAAGATTCCCACTGAGACCATCGAAGTGAACCCTGC AGCTCCAGGACTGGCCCAGCCGAATGGAGCTGTATATGCAGAAGACCATCAGCCACATTCACAAGATATTATCGGTGACCTTTTGGGAACGTTGAGTATT GAAGGACCTCCAGGAGCTGATGCTCAATCTGCACATATTGGAGCTTCTGAATCAGAAGGTGTTCTGAGTACAGCTGATGCTGCAGCTCTCGTACCCTTCG GAGAAGAAACAAGTTCCATCCAGCCTATAGGAAATATCAGTGAAAGATTCTATGCCTTGTGCTTGAAGGATAGCGGTGTCTTGTACGAGGATCCGAACAT CCAGATTGGCATCAAAGCAGAGTGGAAGGCTCACCAAGGCCGTCTTGTTCTCTTCCTCGGAAACAAAAACACGTCTCCTCTTGATTCTGTCCAGGTCCTT CTGTTACCTCCTGCCCATTTGAAGGTCGAGCTCTCAATAGTACCTGATACTATTCCTCCCCGTGCTCAGGTGCAATGCCCGCTGGAATTCGTGAATCTAC GCCCAAGCAGGGATGTTGCCGTTCTCGACTTCTCCTACAAGTCCGGCCCCTCCATGGTAAACGTCAAGCTTCGCCTCCCTGCTGTTCTCAACAAATTTTT CCAGCCCATAACTGTATCGGCAGAAGAGTTCTTCCCTCAATGGAGATCCCTTTCAGGCCCTCCTTTGAAGCTTCAAGAAGTGGTTCGAGGGGTAAGACCG TTGCCTCTTCCGGAAATGGCGAATCTCTTCAACAGTTTCCGGTTGACAGTTTCCCCGGGGCTTGATCCAAACCCCAACAACTTGGTCGCGAGCACCACAT TTTATTCCGAAACAACACGAGCAATGCTTTGCTTGGTGAGAATCGAAACTGACCCTGCAGACAGAACGCAGTTGCGAATGACCGTTGCTTCTGGTGACCC AACGCTCACATTCGAGTTGAAGGAGTTCATCAAGGAGCAATTAGTCAGCATCCCGGGTCCTCCAGCTCAACAAGTAACGCAACAGCCAGCCGGCCCACCG ACCCCTCCGGCCCCCGCGTCACAAGATCCCGGGGCATTACTAGCCGGTTTGTTATGA
AA sequence Show only first row Show all	>Lus10005371 pacid=23148515 polypeptide=Lus10005371 locus=Lus10005371.g ID=Lus10005371.BGIv1.0 annot-version=v1.0 MALSGMRGLSVFISDVRNCQNKEQERIRVDKELGNVRTRFKNEKGLSPYEKKKYVWKMLYIHMLGYDVDFGHMESVSLISAPKYPEKQVGYIVTSCLLNE NHDFLRLAINTVRNDIIGRNETFQCLALTLVGNIGGREFAESLAADVQKLLISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVL TSSMSLFVSLVSNNHEAYWSCLPKCVKTLERLARNQDIPQEYTYYGIPSPWLQVKTMRALQYFPTIEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHA VLFEALALVMHLDAEKEMMSQCVALLGKFIAVREPNIRYLGLENMTRMLMVTDVQDIIKKHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEEL LQYLSSADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYILGEYGH LLARRPGCSPKELFIIIHEKQPTVSTSTIPILLSTYAKILMHTQPADPELQNQIFTIFNKYESCIDVEIQQRAAEYFALSRKGAALMDILAEMPKFPERQ SALIRKAEDTEVDTAEQSAIKMRAQQQMSNALVVTDQLPANGTPSPPSVGQLSLVKIPTETIEVNPAAPGLAQPNGAVYAEDHQPHSQDIIGDLLGTLSI EGPPGADAQSAHIGASESEGVLSTADAAALVPFGEETSSIQPIGNISERFYALCLKDSGVLYEDPNIQIGIKAEWKAHQGRLVLFLGNKNTSPLDSVQVL LLPPAHLKVELSIVPDTIPPRAQVQCPLEFVNLRPSRDVAVLDFSYKSGPSMVNVKLRLPAVLNKFFQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRP LPLPEMANLFNSFRLTVSPGLDPNPNNLVASTTFYSETTRAMLCLVRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQLVSIPGPPAQQVTQQPAGPP TPPAPASQDPGALLAGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	0	1
AT5G22780			Adaptor protein complex AP-2, ...		Lus10020522 [exp]	1.0	0.9607
AT3G45190			SIT4 phosphatase-associated fa...		Lus10016088 [exp]	1.4	0.9518
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	3.2	0.9281
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	4.2	0.9442
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	4.6	0.9323
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	5.5	0.9202
AT1G60070			Adaptor protein complex AP-1, ...		Lus10029177 [exp]	6.3	0.9424
AT1G73180			Eukaryotic translation initiat...		Lus10004803 [exp]	7.1	0.9183
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	7.5	0.9291
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	8.5	0.9289

Compare expression of checked genes

Lus10005371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.