Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64210 448 / 2e-158 AOX2 alternative oxidase 2 (.1) AT3G22370 434 / 4e-153 AtHSR3, ATAOX1A, AOX1A hyper-sensitivity-related 3, alternative oxidase 1A (.1) AT3G22360 423 / 3e-149 AOX1B alternative oxidase 1B (.1) AT3G27620 412 / 2e-144 AOX1C alternative oxidase 1C (.1) AT1G32350 402 / 6e-141 AOX1D alternative oxidase 1D (.1) AT4G22260 76 / 3e-15 IM1, IM IMMUTANS, Alternative oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020523 [exp] 664 / 0 AT5G64210 462 / 4e-164 alternative oxidase 2 (.1) Lus10035670 [exp] 413 / 2e-144 AT3G22370 519 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Lus10002872 [exp] 75 / 1e-14 AT4G22260 466 / 1e-163 IMMUTANS, Alternative oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001500 [exp] 426 / 9e-150 AT3G22370 518 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.012G001600 [exp] 422 / 3e-148 AT3G22370 475 / 4e-169 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.015G019800 [exp] 420 / 1e-147 AT3G22370 526 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.003G103900 [exp] 401 / 2e-140 AT1G32350 433 / 1e-153 alternative oxidase 1D (.1) Potri.011G021800 [exp] 71 / 2e-13 AT4G22260 457 / 7e-162 IMMUTANS, Alternative oxidase family protein (.1) Potri.004G002600 [exp] 68 / 1e-12 AT4G22260 424 / 6e-149 IMMUTANS, Alternative oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF01786 [flax] [poplar] AOX Alternative oxidase
Representative CDS sequence Show only first row Show all	>Lus10005372 pacid=23148521 polypeptide=Lus10005372 locus=Lus10005372.g ID=Lus10005372.BGIv1.0 annot-version=v1.0 ATGAACCAGTTCGTCGTCCGTTCGTCGGCGCTCCGCCGTTTGCTGGCCAGCGGAGAAAGCCAGCAGCGACAATACATGTCTCCGGCCGTGATGCGGCCTC TTTTGGAGGTGTCGCCAGCGGACCAAGTGAAGAGACAGGACGCGGAGGCGTCGATCGGAGTTTCTTACTGGACGAGGACGATGAGTACTTCTTCCTCGTC GCCGTCGTCATCTGTTGCTGAGAAGGAGAAAGGCGATCGAGTGGAAGTGGAGAGCAAGTCTGGCGGAGAAGTGGCCAAAATCAATTTACCGGCGGTTGCG AGCTACTGGGGGATCTCGAGGCCGAAGGTTACTAGAGAAGACGGAACGGAGTGGCCGTGGAACTGTTTCATGCCATGGGAAACTTATCGCTCAGACACTT CAATTGATCTCACCAAGCATCATGTCCCCAAGACTTTCCTCGACAAATTCGCTTTAAGGACCGTCAAAATCCTCCGACTCCCCACCGACATCTTCTTTAA GAGGAGGTATGGCTGCCGAGCAATGATGCTGGAGACAGTAGCAGCAGTCCCAGGCATGGTGGGAGGGATGCTACTCCATTTACGATCCCTCCGCAAGTTC CAACAGAGCGGAGGCTGGATCAAGGCCCTAATCGAGGAGGCTGAAAACGAACGAATGCATCTTATGACAATGGTGGAGCTAGTCCAGCCAGCCTGGTACG AGAGGCTGCTGGTTTTAGCAGTGCAAGGAGTGTTCTTCAACGCCTACTTCGTTTTGTACATTATGTCTCCCAAGCTGGCTCATAGGGTCGTCGGGTACTT GGAAGAGGAAGCCATTCATTCGTACACGGAGTATCTGAAGGATATTAGGGAGGGGAAGATCGAGAATGTTGCTGCACCTGCGATCGCAATTGATTACTGG AGGCTGCCGAAAGATTCGACTCTGGAGGATGTTATTACTGTCATCCGTGCTGATGAAGCTCACCATCGTGATGTCAACCACTTTGCTTCTGATGTACATT ATGAGGGCAAGGAATTGAGGGAGGCACCAGCACCAATTGGTTATCACTAA
AA sequence Show only first row Show all	>Lus10005372 pacid=23148521 polypeptide=Lus10005372 locus=Lus10005372.g ID=Lus10005372.BGIv1.0 annot-version=v1.0 MNQFVVRSSALRRLLASGESQQRQYMSPAVMRPLLEVSPADQVKRQDAEASIGVSYWTRTMSTSSSSPSSSVAEKEKGDRVEVESKSGGEVAKINLPAVA SYWGISRPKVTREDGTEWPWNCFMPWETYRSDTSIDLTKHHVPKTFLDKFALRTVKILRLPTDIFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKF QQSGGWIKALIEEAENERMHLMTMVELVQPAWYERLLVLAVQGVFFNAYFVLYIMSPKLAHRVVGYLEEEAIHSYTEYLKDIREGKIENVAAPAIAIDYW RLPKDSTLEDVITVIRADEAHHRDVNHFASDVHYEGKELREAPAPIGYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	0	1
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10020523 [exp]	1.0	0.9216
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	1.7	0.8842
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	2.4	0.8869
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	4.0	0.8793
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	4.9	0.8580
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	5.0	0.8693
AT4G37440			unknown protein		Lus10014864 [exp]	5.3	0.8544
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	5.5	0.8494
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10037759 [exp]	6.3	0.8542
					Lus10009045 [exp]	8.1	0.8285

Compare expression of checked genes

Lus10005372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.