Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005373 [exp] 353 / 6e-114 AT5G36930 404 / 8e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020537 [exp] 179 / 1e-50 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10020536 [exp] 176 / 3e-49 AT1G27170 392 / 8e-118 transmembrane receptors;ATP binding (.1.2) Lus10020524 [exp] 175 / 4e-49 AT1G27170 395 / 9e-119 transmembrane receptors;ATP binding (.1.2) Lus10020525 [exp] 163 / 1e-47 AT4G16950 66 / 2e-11 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020533 [exp] 167 / 4e-46 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2) Lus10020534 [exp] 165 / 2e-45 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026961 [exp] 164 / 3e-45 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038482 [exp] 119 / 1e-29 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 54 / 6e-08 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G077260 [exp] 50 / 8e-07 AT5G36930 195 / 8e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013450 [exp] 49 / 3e-06 AT5G36930 422 / 2e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008868 [exp] 48 / 6e-06 AT5G36930 471 / 1e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G014101 [exp] 48 / 6e-06 AT5G36930 435 / 1e-137 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 48 / 7e-06 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009251 [exp] 47 / 9e-06 AT5G36930 508 / 1e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009400 [exp] 47 / 9e-06 AT5G36930 504 / 4e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G283400 [exp] 47 / 1e-05 AT5G36930 144 / 9e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008228 [exp] 47 / 1e-05 AT5G36930 468 / 3e-148 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005375 pacid=23148529 polypeptide=Lus10005375 locus=Lus10005375.g ID=Lus10005375.BGIv1.0 annot-version=v1.0 ATGGGAACATCTAGTGTGCAAGCTCTGGAAGTGAATATGAAAGGTGAAGATCAAGTTCTCACAGACAAAGAATTCAAAAATTTATTGATGTTAAGGTTTC TCATGGTGTACAATGGAAGACTGGCTGGAAATTTCAAAGAGGTTCTTCCAAATTTATGTTGGCTAGGACTGATCAACTGTGACTCAGTTCCCTCTTATCT TAACCTAAAGAAGTTGGTTGTTCTGCAATTTGAGGAGTCCTCTCTGGGAGATGGCTGGAAAGGATGGAATGAACTCAAGAGTCAAGATTGCACCAAATCT GTAAGTGGTGTCTCTAAAGGGATGCTTCAACCTAAAAGAAGTTCCAGACCTGTCCAATTGCAGAGCTCTAGATGTTCTAGACTTCAGAGAATGCCCGAAG ATGCGCGGAGAGACATTCGAAACCTGCCGAAGCTGAAGCTCCTCGGGATCTCCAAGACCAAGATATCGAAGATAAAAGGTGATATCGGACGGTTAGAGAA TCTACAACACCTTGATGCTAGCCAGTCCAGTCTGGCAAAAGTTCGCAAGCTATCATATCTCGAAATTCTGAAGCTGAAATTAACTCCTCCCGACAAGTTG GAGATCACAGAAAACCTTCCAGACAGCTTAAAGACCCTTACCATCTCATCTTCTTACCTTTCTGCCCTCCCGTCGTCTCTGACCTACCTCGAGACTTGCT ACTGCGAGGCTCTCCCGAATCTCTCGAATACCAGGAATCTCTTGCAGCTGTATCTGAGAAACGTCAAAATTCGTGAAGTTACCTGTCTGGGAGAGCTCAA GCTGCTGGAAAATCTGGTGATAGAAAAAGCTCCGAAACTCGATAATTTGGACGGTCTTGAGAATCGGTTGTTAGTTTCTTTAGAATTCAAGCAAAAGGCT CAACGTTTTCATTAA
AA sequence Show only first row Show all	>Lus10005375 pacid=23148529 polypeptide=Lus10005375 locus=Lus10005375.g ID=Lus10005375.BGIv1.0 annot-version=v1.0 MGTSSVQALEVNMKGEDQVLTDKEFKNLLMLRFLMVYNGRLAGNFKEVLPNLCWLGLINCDSVPSYLNLKKLVVLQFEESSLGDGWKGWNELKSQDCTKS VSGVSKGMLQPKRSSRPVQLQSSRCSRLQRMPEDARRDIRNLPKLKLLGISKTKISKIKGDIGRLENLQHLDASQSSLAKVRKLSYLEILKLKLTPPDKL EITENLPDSLKTLTISSSYLSALPSSLTYLETCYCEALPNLSNTRNLLQLYLRNVKIREVTCLGELKLLENLVIEKAPKLDNLDGLENRLLVSLEFKQKA QRFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56130			Leucine-rich repeat transmembr...		Lus10005375 [exp]	0	1
					Lus10042563 [exp]	4.6	0.8013
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10010842 [exp]	7.5	0.7919
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10042865 [exp]	10.1	0.7834
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	12.2	0.7748
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10003426 [exp]	12.8	0.7264
AT2G32760			unknown protein		Lus10022575 [exp]	22.2	0.7092
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	22.3	0.7158
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	25.0	0.7218
AT5G23200			unknown protein		Lus10017393 [exp]	26.2	0.6822
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	26.7	0.6772

Compare expression of checked genes

Lus10005375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.