Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58660 295 / 2e-96 Ribosomal protein L1p/L10e family (.1) AT2G42650 274 / 2e-89 Ribosomal protein L1p/L10e family (.1) AT1G06380 206 / 1e-64 Ribosomal protein L1p/L10e family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024134 [exp] 510 / 0 AT3G58660 351 / 2e-118 Ribosomal protein L1p/L10e family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145000 [exp] 324 / 2e-108 AT3G58660 352 / 2e-118 Ribosomal protein L1p/L10e family (.1) Potri.015G147700 [exp] 302 / 7e-100 AT3G58660 348 / 9e-117 Ribosomal protein L1p/L10e family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005380 pacid=23155599 polypeptide=Lus10005380 locus=Lus10005380.g ID=Lus10005380.BGIv1.0 annot-version=v1.0 ATGGTAACTCCGCCGCCGGGAACCGGTGTTGGTCCCGGAGCAGTGGAGAGAGCTGTGAACGCTCTCCTGGGCTGGCGAGCTGCCAAGAAGAAATCCGAGA AAGCTCAGCTCTTAGAACAGGATGAATACGTTTATGTGGTCGTATCTCTCAAGAAAATCCCTGAAAAGGGCGTCAGCCGAGTCAAGCCGTACAAGGTCGA TCTCCCTCATCCCCTTGTAAACACTCAAGATGGAAGTTCGGAGCTCTGCTTGATTATTGACGATAGGTCCAAATCCGGCCTCACTAAGGAAGACGCGAAG AAGAAGATTGACAACGATGGAATCCCGATCTCCAAAATCATCAAGCTTTCCAAGCTTAAGACGGACTACAAGGCGTTTGAGGCGAAGAGGAAGCTTTGCG ATTCGTACGACATGTTTTTGGCGGACAGGAGGGTGATTCCGTTGTTGCCGAAGATGTTGGGGAAGGAGTTCTTCAGGAAGAAGAAGATTCCTGTGTCGGT CAATTTGAAGCACAAGAACTGGAAGGAACAGATTGACAGTGCTTGTGGATCTGCTCTGGTGTTTGTTGGGACAGGTACTTGTGCTGTTGTGAAAGCAGCA AGACTGTCAATGGAGAAAGATGAGATTTCAGAGAATGTAATGGCTACAATCAATGGGGTTGTTGAGAAGGTTGTGCCTAAAAAGTGGGGTGGTGTTAGGT CTCTTCACTTGAAGCTACTTGATAGCTTGGCCCTGCCTCTTTACGAGACTGTTCCCGAGTTGAAGTTGAAGATTGTGAGTCAGAAAGCGGCGGTAGAGGA GGAGAAAGAGGAGAAGGAAGACTTGAAGGAGAATGTTGAGAAGAAGAAGAAGGAAAAGGGAAGAATCAGCGAGGTTAGGTATATGGACAGTAATTGTGAT GCAGCTGATAGTGAGGAAGTTGAGAAAGATGTTGCATTGGTTAATGATGGTGATGATGAGAAGGAAGAGATGGGAAGTGCTGAGGTTGTGGTTAAAAAGA GGAAGAAGGGAGTTAAAGGCCAAGATGAGAAAAGGGCAAAGAAGGTAGCTAAAGTGCTGAAGGGTGTAGATGGTGGCATCAAGGGGAAGAAAGGAGTCAG TAAAGGGGCAGATGAGGCGAGCATCAAGCTGAAGAAAAAGAAGAAGAAAGTAGCAGCTGAAGCTTAA
AA sequence Show only first row Show all	>Lus10005380 pacid=23155599 polypeptide=Lus10005380 locus=Lus10005380.g ID=Lus10005380.BGIv1.0 annot-version=v1.0 MVTPPPGTGVGPGAVERAVNALLGWRAAKKKSEKAQLLEQDEYVYVVVSLKKIPEKGVSRVKPYKVDLPHPLVNTQDGSSELCLIIDDRSKSGLTKEDAK KKIDNDGIPISKIIKLSKLKTDYKAFEAKRKLCDSYDMFLADRRVIPLLPKMLGKEFFRKKKIPVSVNLKHKNWKEQIDSACGSALVFVGTGTCAVVKAA RLSMEKDEISENVMATINGVVEKVVPKKWGGVRSLHLKLLDSLALPLYETVPELKLKIVSQKAAVEEEKEEKEDLKENVEKKKKEKGRISEVRYMDSNCD AADSEEVEKDVALVNDGDDEKEEMGSAEVVVKKRKKGVKGQDEKRAKKVAKVLKGVDGGIKGKKGVSKGADEASIKLKKKKKKVAAEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10005380 [exp]	0	1
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10018859 [exp]	1.4	0.8800
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10024134 [exp]	2.2	0.8449
AT1G54850			HSP20-like chaperones superfam...		Lus10035725 [exp]	2.4	0.8520
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	3.0	0.8515
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10012283 [exp]	3.5	0.8422
AT1G73770			unknown protein		Lus10013498 [exp]	4.1	0.7922
					Lus10027105 [exp]	6.0	0.8000
AT4G00250	GeBP		DNA-binding storekeeper protei...		Lus10007188 [exp]	6.6	0.8467
AT1G78190			Trm112p-like protein (.1)		Lus10032269 [exp]	7.0	0.7468
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031700 [exp]	7.5	0.8101

Compare expression of checked genes

Lus10005380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.