Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79400 302 / 6e-93 ATCHX2 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) AT1G16380 295 / 6e-90 ATCHX1 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) AT2G13620 134 / 9e-33 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G17630 129 / 4e-31 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT5G41610 124 / 2e-29 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT3G53720 112 / 1e-25 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT4G23700 112 / 2e-25 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT1G64170 96 / 3e-20 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT3G52080 95 / 4e-20 CHX28 cation/hydrogen exchanger 28 (.1) AT1G05580 95 / 5e-20 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024132 [exp] 837 / 0 AT1G16380 641 / 0.0 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) Lus10026156 [exp] 420 / 2e-141 AT1G79400 356 / 1e-114 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10024131 [exp] 317 / 4e-99 AT1G79400 580 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10030013 [exp] 141 / 5e-35 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 141 / 5e-35 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 124 / 3e-29 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017540 [exp] 115 / 2e-26 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10017541 [exp] 104 / 5e-23 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10004932 [exp] 102 / 2e-22 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194200 [exp] 414 / 2e-135 AT1G79400 625 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.003G194100 [exp] 388 / 1e-125 AT1G79400 597 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.007G105200 [exp] 147 / 4e-37 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.013G142301 [exp] 138 / 5e-34 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 135 / 3e-33 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 132 / 6e-32 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G004800 [exp] 126 / 3e-30 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G005200 [exp] 125 / 8e-30 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.019G123700 [exp] 122 / 6e-29 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 120 / 3e-28 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10005382 pacid=23155608 polypeptide=Lus10005382 locus=Lus10005382.g ID=Lus10005382.BGIv1.0 annot-version=v1.0 ATGGATCAAGCGAAGCGCCTCCTCTGTACCCACGACCTATGGAACCCTCTCAACACAACTTTTGTACAGACCTGTGGCATGCTCCTCGTCTCCCAGATCT TCCACGTCATCCTCAAACCCCTCGGCCAACCCGGCCCCGTCGCCCAAATCCTCGCGGGATTGGTGTTGGGACCCTCATTGCTATGCAAGATCGACAGAAT ACGGCACGTCTTCATACAGCCCACGTTCGACGACTACAGCTTCCTCCTCCTCTTCGTATTTCGGATCCTTTTCATGTTTACCATCGGTCTCGAAGCCGAT CTCCCGTACATCTCCAGAAACTACCAGAAGATCGGCGTGATCGCCGCCTGGGCGGTGGCTGTGTGCGCCGTGTTCGGTGCCGCGGCTTCCTTCTTCGTAA TCAACGTCCTCAAGGTGACGGAGCACAAATTCGCGTTCGCCAACATCATTCTGATCATCGTCTCCAGCTGCGCCTCCCCTGTCGTCGTCCGCCTCGTCGC CGAGCTCAAGTTCGACACCGCTGATGTCGGGAGGCTCGCCATCTCAACAGCATTGTTCGTGGAGCTGTTCTGCATCACTTGGTATTCGACCTACTTGGCT TTCAGCGCCGGGAAGATGTTTGGGTTCGCCGTCGTCTGTGTCATCGGTACTGGGATCGTCGCTTACGCAAACAGATTCCTGGCACTATGGTGCATCAAGA GGAGCAGGAACATGAAGTTCGTGCCGAACACAGAGATGTCAGCGATACTGGTGCCCGTAATCTTACTATCTTTCATGACAGAAAAGCTGGGATACAACAG CATGATCTCCTGCTTCCTGGTAGGGGTGGCTTTCCCTAGGGAAGGCAAGACCTCGAGGACGTTGCTCCATCGCCTAACTTACGCTGTCAACAACTTCATC CTCCCAGTCTACTTCGGATTCAACGGCTTCAGATTCGACATCAACTACCTGCTAAACCTCAGGAACTGCATAGTGGTCGGGCTGGTGATTGTGTTGAGCA TGGGGGGAAAGATCATCGGCACCTTGTTCGCTTGCCAGCACTTGAAAATCCCGAGGAATGAAGGCGTGGTCCTTGCCTTCATTCTCAATTTGAAGGGGCA CGGCGAGCTTCTTGTCATCGAAGCTTTCTCCAGACATGGTGGGACGAGAACACCACACAAGCTAGTGATAATAATAGTAGTGATCAACACGTTAATAGCA GGTCCAGTAGTTTCCTTCATCCTCAACCGAGAAGCCAAGTACTTCGCCTACAACCTCACCTTCCTCGAAATCCTCGACCCGGAAAAAGAACTCCGTTTCC TCCTCTGCGTCTACGAGTCCCGCCACATCACCTCCAAGCTCGGCCTCATCTCCGCTATGACCGGCTCCCAGCGCTCCCCCACCGTCACCTACCTCCTCCA CCTCATCGAGCTCCTGAAAAAACACCGCCGCAAGAAAAAACTCATGTATCACGAGCTCCAAGACGGCGACCAGTTCAGCGACGACGACGACTTGCACAAG ACAAGGCTTGACCATTGGGATGAGCTCTGCAAGATCTTCGAATGTAGTCGTGCAGACAGAACAGACGACATGACTGCAACTAACACCAAACACCCGTATA ACTACGAGGCTGAGACAACACCAATGATGGAGGACTTTATAAACGCCTGGTTCGACATTCGAGCCGAAGGTTTGAGGGATGTCGGGGAGGAGACGATGAA CACCGGTGATGAGAACATGAACACTGGACGGGAAATCACGAATAATGGTGACGAGACAGACAACAAGGAACTAGAGAAGACAAATTGGAAGATTAGCTGA
AA sequence Show only first row Show all	>Lus10005382 pacid=23155608 polypeptide=Lus10005382 locus=Lus10005382.g ID=Lus10005382.BGIv1.0 annot-version=v1.0 MDQAKRLLCTHDLWNPLNTTFVQTCGMLLVSQIFHVILKPLGQPGPVAQILAGLVLGPSLLCKIDRIRHVFIQPTFDDYSFLLLFVFRILFMFTIGLEAD LPYISRNYQKIGVIAAWAVAVCAVFGAAASFFVINVLKVTEHKFAFANIILIIVSSCASPVVVRLVAELKFDTADVGRLAISTALFVELFCITWYSTYLA FSAGKMFGFAVVCVIGTGIVAYANRFLALWCIKRSRNMKFVPNTEMSAILVPVILLSFMTEKLGYNSMISCFLVGVAFPREGKTSRTLLHRLTYAVNNFI LPVYFGFNGFRFDINYLLNLRNCIVVGLVIVLSMGGKIIGTLFACQHLKIPRNEGVVLAFILNLKGHGELLVIEAFSRHGGTRTPHKLVIIIVVINTLIA GPVVSFILNREAKYFAYNLTFLEILDPEKELRFLLCVYESRHITSKLGLISAMTGSQRSPTVTYLLHLIELLKKHRRKKKLMYHELQDGDQFSDDDDLHK TRLDHWDELCKIFECSRADRTDDMTATNTKHPYNYEAETTPMMEDFINAWFDIRAEGLRDVGEETMNTGDENMNTGREITNNGDETDNKELEKTNWKIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10005382 [exp]	0	1
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10007898 [exp]	5.9	0.7791
AT3G24630			unknown protein		Lus10011100 [exp]	19.2	0.7521
AT5G16500			Protein kinase superfamily pro...		Lus10020383 [exp]	22.5	0.7547
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10010715 [exp]	25.5	0.7332
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	29.1	0.7520
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	33.9	0.7404
AT4G17540			unknown protein		Lus10004359 [exp]	37.7	0.7430
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10020244 [exp]	38.6	0.7177
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	43.5	0.7317
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026828 [exp]	45.2	0.7140

Compare expression of checked genes

Lus10005382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.