Plant FIBer expression Database

Lus10005383 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12300 361 / 6e-129 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G193900
[exp]
371 / 6e-133 AT3G12300 365 / 5e-131 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05018 DUF667 Protein of unknown function (DUF667)
Representative CDS sequence
>Lus10005383 pacid=23155597 polypeptide=Lus10005383 locus=Lus10005383.g ID=Lus10005383.BGIv1.0 annot-version=v1.0
ATGTTCAAAAATACATTTCAATCTGGATTTCTATCCATCCTGTACAGTCTCGGGAGCAAACCTCTGCAGATATGGGATAAAGAGATTTCAGATGGGCATG
TGAAACGGCCTCATGACGATGACATACAGTCAGATGTTTTAGAAATCATTGGATCCAAGATCCAGTCTGCTTACATTACCTGCCCAGCTGATCCTAATGC
CACCCTTGGTATTAAACTTCCTTTCTTGGTCATGATTGTCAAGAACTTGAAGAAGTACTTCACTTTTGAGATTCAAGTGCTGGATGATAAGAATGTCAGG
AGACGTTTCCGAGCTTCTAACTTTCAAGCTGTAACTCGAGTGAAGCCATATATTTGCACTATGCCATTGAAACTGGATGAAGGATGGAATCAAATACAGT
TCAATTTGGCTGATTTTACCAAGAGGGCTTACGGGACCAACTACGTCGAGACTTTAAGAGTTCAGGTTCATGCAAATTGTCGCTTAAGGAGGATATATTT
CGCAGATCGTATGTACTCAGAAGAGGAACTTCCTCCAGAATTTAAGCTCTACCTTCCAATGCAGCTGTTGCTTCTTATTGCAGAAAGCATGAGGAAATCT
CTGGCATCTATGCTCGTGGATGTGAGGCAGCTCGTTTAG
AA sequence
>Lus10005383 pacid=23155597 polypeptide=Lus10005383 locus=Lus10005383.g ID=Lus10005383.BGIv1.0 annot-version=v1.0
MFKNTFQSGFLSILYSLGSKPLQIWDKEISDGHVKRPHDDDIQSDVLEIIGSKIQSAYITCPADPNATLGIKLPFLVMIVKNLKKYFTFEIQVLDDKNVR
RRFRASNFQAVTRVKPYICTMPLKLDEGWNQIQFNLADFTKRAYGTNYVETLRVQVHANCRLRRIYFADRMYSEEELPPEFKLYLPMQLLLLIAESMRKS
LASMLVDVRQLV

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12300 unknown protein Lus10005383
[exp]
0 1
AT1G55340 Protein of unknown function (D... Lus10013412
[exp]
1.4 0.9607
AT3G49640 Aldolase-type TIM barrel famil... Lus10003486
[exp]
3.0 0.9597
AT5G07910 Leucine-rich repeat (LRR) fami... Lus10000681
[exp]
3.5 0.9600
AT3G07580 unknown protein Lus10012299
[exp]
3.5 0.9422
AT5G01260 Carbohydrate-binding-like fold... Lus10002495
[exp]
6.5 0.9341
AT3G16990 Haem oxygenase-like, multi-hel... Lus10016885
[exp]
6.7 0.9322
AT3G47160 RING/U-box superfamily protein... Lus10001209
[exp]
6.9 0.9340
AT2G02760 ATUBC2 ubiquitin-conjugating enzyme 2... Lus10013263
[exp]
7.1 0.9415
AT5G48340 unknown protein Lus10036410
[exp]
7.2 0.9282
AT1G05410 Protein of unknown function (D... Lus10041201
[exp]
7.7 0.9383

Lus10005383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.