Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G07410 621 / 0 PCN POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) AT1G27470 576 / 0 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024128 [exp] 1080 / 0 AT4G07410 996 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G117500 [exp] 731 / 0 AT4G07410 1053 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G014900 [exp] 710 / 0 AT4G07410 1032 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10005385 pacid=23155609 polypeptide=Lus10005385 locus=Lus10005385.g ID=Lus10005385.BGIv1.0 annot-version=v1.0 ATGCCGAAGAACGTGTACAGGAACAGCTCACTCGCATGGAAGCCCTCTCCAGTTGTAGCCCTAGCTACCAGTGCCGATGACTCCCAAGTTGCCGCCGCTA GGGAGGATGGCTCCATGGAGATTTGGCTTGTCTCGCCTGGCTCAGTGGGGTGGCACTGCCAGCTGACAATTCATGGCGATTCTAGTTCGAGGGTTTCGTC GCTCGTGTGGTGTCGCACTGGCTCAAAGGGATTGCCTTGTGGTAGATTGTTCTCATCAAGCATTGATGGCTCTGTATCAGAATGGGACCTCTTTCACTTG GAGCAGAAGATTGTTCTGGAGTCTATTGGCTTCTCAATTTGGCAGATGTCTGTTGCACCTCAATGTGCTTCACTGATTCACCCGGAGGTCAAATCTCTGG ACTTGGGAAATGGCTTCTTGAATCACAGTCATAATGACGACCACGATGATGAATCAAGTGAAAGTGATAATGACTCAAGTTCTGAGGAGCTTCACAATCC AGTTTCCGCAGATACACGCTTGGCTATTGCATGTGATGATGGTTGTGTGCGTCTATACACTATTCCTGAGTCAGATGAGTTGATTTACAATAGAACATTG TCTAGGATAAGCCATAAAGGCGATATCAAGCTCATAGCTTTGGTCGTCAATACTCTTCATCATCCTCGAATGAGAAGAGTTGCTGAAGCAGTGATTTGCC GATTTCGCAATCGGCTTAAAGAAAGTTTCGATTTCGCAATAGGCAGAGGTGAAGTAGTCATCTTGGTTCGGTGGTCAGCGTTGGCAGCGGCAGGAAGGAG TGAGGACCGGCGGTGGCAGGCTCGGCGTCGATCGTCTGCACAGAGAGGATATGGAAGGAGGATGACGGCCAGCTGCAAGTTTGGCGTCGGAGGGAGGAGT GAGGACCGGTTGCAAGCTCGACGTCGGTGGGAAGCTCGGCAGTGGCAGAGTCTGTTGACGGTAGCTTCAATCTCGATCAAATATCTGTATTTGGGAAATG GCTTCTTGAATACCAGTCATAATGACGACCACGATGATGAATCAAGTGAAAGTGATAATGACTCAAGTTCTGAGGAGCTTCACAATCCAGTTTCCGCAGA TACACGCTTGGCTATTGCATGTGATGATGGTTGTGTGCGTCTATACACTATTCCTGAGTCAGATGAGTTGATTTACAATAGAACATTGTCTAGGGTCAGT GGACGCACTTTGAGTGTGACATGGAGTTCGGATGCTACTAGGATTTTCTCAGGCAGCAGTGATGGTTTTGTTAGATGCTGGGATGCTTCACTTGGCCATG AGATATATCGGATAACAGTTGGGCTTGGTGGTCTGGGTGGTGGAACTGAAATTCGTGTGTGGTCTCTACTTGCCCTGAGATGTGGGACACTCGTTAGTGC AGACAGTACTGGAACCGTCATTCTCTATAAGCTTTCTGGTGAGATAGGATCTAGTGATGATACATCTACATCCACGGTGATGAGGAGGTGGGTGTATGTG GGTTATGTCAGAGCTCATACACATGATATTAGAGCCTTGACAATGGCTGTACCAATCTGCCGTGAAGATGCACTACCTGAGGAAAAGGTGAAGAAAGACC GGAAGAGGAGGCGTCATGTTGAATTTAGCTATCACAAGTGGGCGCATTTAGGAGTTCCCATGCTTATATCTGCCAGTGATGACACAAAGTTGTTCGCATA TTCTGCGAAGGAGTTCTCTAAGTTCTCGCCACATGATATTTGTCCTGCACCTCAGAGAATGCCAATCCACTTGGTCCCTAATACAATCTCCAACAAGAAC CCTTTACTTCTTGTCCAGGCATCTAGTACTTTGGATATTCTTCGTGTCCGCACAGAGGATGGAAACATCTCAGATAGTGTTTCTGGTACATCAAAGGGCC TTGCAAAGACAGTTTTGAGGGCTCAAATATTATCTAAAAAGAAGATCATATGCAGCTGCATTAGCAATTCTGGAATGCTACTTGCTTACTCGGATCACAA GAAGTCCAATTTATTTGATTTGAAGATGCATGTTGATCCTAAAATTCCATGGAAAGTTACCAAAAGGGAAGCTAGCGAAGAGGAAGCTTGCAAGGAGTTT CCATATGCACATTGTATGGCCTTTAGTTCGGATTCTTCAAGGCTAATATTGGCAGGCCATAACAGAAGGATATATATTGTGGATGTGGATAGCTTGAAAA TAGTGCATACCTTCACACCGCAGCGTCACGATTACAATGAAGAATCACCCAGTGAGCCGCCTGTGACAAAACTGTTTACTAGCAATGATGGGCAGTGGTT AGCTGCTATTAATTGCTTTGGTGATATATATGTGTTCGACATGGAGACACAAAGGCAGCATTGGTTCATCTCAAGACTAGATGGTGCCTCAGTTACTGCT GGAGGTTTCCCCCCACAAAATAACAATGTGCTTGTAGTCACTACCTCCACGAACCAAGTCTATGCATTTGACGTGGAAGCAAAACAGTTAGGGGAATGGT CACAACGGAATTCATCTTTTTTGCCGAAGACGTACCAGGAGTTTCCGGGAGAAGTTATTGGTCTCTCGTTTCTGCCTTTATCAAACTCTACATCTGCCAT CATTTATAGTTCCAGGGCAATGTGTCTGATCGATTTTGGGATGCCAGTGGAAAGAGAGGAAGATAGTGGTTCACGATTAGTAAGATTAAAAAGCTCTGCA AACAACAAGGCTAGTCTGAAACGCACAAGGAAAGAGTATGAAGCGAAGATTGAAAATAGGAAGAACTTCGAGTTTGTTCCTTTCAATAATCCAGTTTTAT TTGTGGGACACCTTTCAGAGAACGGCATATTGATCTTAGACAAGCCATGGTTGAAGACATATATTTGGCACTTAAAAGGAAAAAAGAACGAAAATGGAGA TATCAGCGAAGGAGGGTGTCTGGAGCAGAGAGTTCAAGAAAAGATGTTTTGGTATTTGCATGGCCTCCTCAGTGCTTGGTGTGGCATGGGATCCTCGATA CTTCTGCTTGGTCGTGCAGGCAAGGTTTGGTTGGTGATCGACTGGATGAGGAAAAAAGAATGTTGTGGTATCGACTATTTATTGTATCCCTAG
AA sequence Show only first row Show all	>Lus10005385 pacid=23155609 polypeptide=Lus10005385 locus=Lus10005385.g ID=Lus10005385.BGIv1.0 annot-version=v1.0 MPKNVYRNSSLAWKPSPVVALATSADDSQVAAAREDGSMEIWLVSPGSVGWHCQLTIHGDSSSRVSSLVWCRTGSKGLPCGRLFSSSIDGSVSEWDLFHL EQKIVLESIGFSIWQMSVAPQCASLIHPEVKSLDLGNGFLNHSHNDDHDDESSESDNDSSSEELHNPVSADTRLAIACDDGCVRLYTIPESDELIYNRTL SRISHKGDIKLIALVVNTLHHPRMRRVAEAVICRFRNRLKESFDFAIGRGEVVILVRWSALAAAGRSEDRRWQARRRSSAQRGYGRRMTASCKFGVGGRS EDRLQARRRWEARQWQSLLTVASISIKYLYLGNGFLNTSHNDDHDDESSESDNDSSSEELHNPVSADTRLAIACDDGCVRLYTIPESDELIYNRTLSRVS GRTLSVTWSSDATRIFSGSSDGFVRCWDASLGHEIYRITVGLGGLGGGTEIRVWSLLALRCGTLVSADSTGTVILYKLSGEIGSSDDTSTSTVMRRWVYV GYVRAHTHDIRALTMAVPICREDALPEEKVKKDRKRRRHVEFSYHKWAHLGVPMLISASDDTKLFAYSAKEFSKFSPHDICPAPQRMPIHLVPNTISNKN PLLLVQASSTLDILRVRTEDGNISDSVSGTSKGLAKTVLRAQILSKKKIICSCISNSGMLLAYSDHKKSNLFDLKMHVDPKIPWKVTKREASEEEACKEF PYAHCMAFSSDSSRLILAGHNRRIYIVDVDSLKIVHTFTPQRHDYNEESPSEPPVTKLFTSNDGQWLAAINCFGDIYVFDMETQRQHWFISRLDGASVTA GGFPPQNNNVLVVTTSTNQVYAFDVEAKQLGEWSQRNSSFLPKTYQEFPGEVIGLSFLPLSNSTSAIIYSSRAMCLIDFGMPVEREEDSGSRLVRLKSSA NNKASLKRTRKEYEAKIENRKNFEFVPFNNPVLFVGHLSENGILILDKPWLKTYIWHLKGKKNENGDISEGGCLEQRVQEKMFWYLHGLLSAWCGMGSSI LLLGRAGKVWLVIDWMRKKECCGIDYLLYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	0	1
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	1.7	0.9451
AT2G34357			ARM repeat superfamily protein...		Lus10021944 [exp]	1.7	0.9489
AT2G41620			Nucleoporin interacting compon...		Lus10039624 [exp]	2.8	0.9455
AT5G11240			transducin family protein / WD...		Lus10020907 [exp]	3.2	0.9303
AT4G32910			unknown protein		Lus10038723 [exp]	4.2	0.9304
AT4G28200			unknown protein		Lus10003351 [exp]	4.5	0.9344
AT5G17270			Protein prenylyltransferase su...		Lus10035305 [exp]	4.5	0.9186
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021017 [exp]	5.5	0.9255
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10036232 [exp]	6.9	0.9146
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	7.1	0.9340

Compare expression of checked genes

Lus10005385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.