Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74320 425 / 4e-148 Protein kinase superfamily protein (.1) AT4G09760 387 / 2e-133 Protein kinase superfamily protein (.1.2.3) AT1G71697 386 / 7e-133 ATCK1 choline kinase 1 (.1) AT2G26830 137 / 3e-36 EMB1187 embryo defective 1187, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024127 [exp] 691 / 0 AT1G74320 484 / 4e-171 Protein kinase superfamily protein (.1) Lus10026145 [exp] 501 / 3e-175 AT1G74320 499 / 6e-176 Protein kinase superfamily protein (.1) Lus10028728 [exp] 380 / 2e-130 AT4G09760 469 / 1e-166 Protein kinase superfamily protein (.1.2.3) Lus10028696 [exp] 377 / 3e-129 AT4G09760 464 / 8e-165 Protein kinase superfamily protein (.1.2.3) Lus10019424 [exp] 145 / 1e-37 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10008675 [exp] 0 / 1 AT1G74320 91 / 2e-22 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G032000 [exp] 474 / 2e-167 AT1G74320 531 / 0.0 Protein kinase superfamily protein (.1) Potri.003G193000 [exp] 473 / 8e-167 AT1G74320 523 / 0.0 Protein kinase superfamily protein (.1) Potri.005G197500 [exp] 419 / 7e-145 AT4G09760 486 / 1e-172 Protein kinase superfamily protein (.1.2.3) Potri.002G063700 [exp] 409 / 1e-141 AT4G09760 481 / 2e-171 Protein kinase superfamily protein (.1.2.3) Potri.006G120700 [exp] 133 / 8e-35 AT2G26830 524 / 0.0 embryo defective 1187, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01633 [flax] [poplar] Choline_kinase Choline/ethanolamine kinase
Representative CDS sequence Show only first row Show all	>Lus10005386 pacid=23155594 polypeptide=Lus10005386 locus=Lus10005386.g ID=Lus10005386.BGIv1.0 annot-version=v1.0 ATGGGTGCCGGCAAGAAAGATGAACGGACGCCGGAAGAGCGTGTACCGGGAGAGGCGAAGGAGATGCTGAAATCATTGGCATCAAGGTGGGAAGATGTGA CCGATGCAAACTCATTACAAATCATCCCTCTTAAAGGTGCCATGACCAACGAGGTCTTCCAAATCAAATGGCCAACAAAGGCCGGCGAGCTCTCTCATAA AGTCATCGTCCGAATCTACGGTGTGGGCGTGGAGGTTTTCTTTGACAAAGATGATGAGATCCGCACATTTGAGTTCATGTCCAAACAAGGGCATGGACCA CGTCTGCTTGGTCGCTTTTCTAGTGGCAGGATTGAAGAGTTCATCCGTGCTCGGACACTATCAGCCTCTGATCTGCGTGATAAAGACACCTCTCTACTTA TAGCAGCAAAAATGAGGGACTTCCATAGCCTTGAGATGCCTGGTCAAAAAGTTGTCCACCTCTGGGATAAGCTGAGAAAGTGGCTGAAAGTAGCAAAAGA CACATGCTCTGTCGAAGAAGTTCAAATATTTCGGTTGGATGAACTTGACGGTGAAATCACATTTCTCGAGAAGGAACTCTCCATCGACCAATACGTTGGG TTTTGTCACAATGATCTGCAGTATGGTAACCTAATGATTGATGAAGAAACCAAAGCAGTGACCATAATAGACTACGAGTATGCAAGTTACAACCCAGTTG CCTTCGATTTAGCAAATCATTTTTGTGAGATGGCTGCCGACTATCACACAGATACACCGCATGTATTGGATTATATTGAATACCCTGGTCTGGAGGAGCG CAGAAGATTTGTGAATGCGTATCTGAGTTCTTCAGTTGATACCTCGCAGCCTCGCCGTCTCCAGATCTACCCACCACAGTCATCATCGCGGTTCTTCTGC ACTGAAGTGAAGGAACATGTTAACAAAATTGAGTTTGATTACTCGGACTACGCAAGACAACGACTTGACCAATACTGGCTTAAGAAGTCTACACTATTTG CTTCATCAGCAAAAACCACCACTGGTAAAGAGCCTGAAAGTGAAGTAGCAGCCGCAGACAAGGAAGGCAAGGAATCATCGGTCTCAACGGAGAGTGCATC GGATGAAAGCGCAGGGGCGAAGCAGCAATCGTCGAACCAACAGGGCGTGTTCAGGAAGTTCAAGAGGTATTTGGGCTTCACCAATGTGTTTAGGAGGAAC GCTGGTACTAGTCACAATAATCCAGCAAAATCATCTGACCAGCCTCCTCCGGCACATCCAGATGCCCCTGATGCTTCCAAAACCACGCATGATTGA
AA sequence Show only first row Show all	>Lus10005386 pacid=23155594 polypeptide=Lus10005386 locus=Lus10005386.g ID=Lus10005386.BGIv1.0 annot-version=v1.0 MGAGKKDERTPEERVPGEAKEMLKSLASRWEDVTDANSLQIIPLKGAMTNEVFQIKWPTKAGELSHKVIVRIYGVGVEVFFDKDDEIRTFEFMSKQGHGP RLLGRFSSGRIEEFIRARTLSASDLRDKDTSLLIAAKMRDFHSLEMPGQKVVHLWDKLRKWLKVAKDTCSVEEVQIFRLDELDGEITFLEKELSIDQYVG FCHNDLQYGNLMIDEETKAVTIIDYEYASYNPVAFDLANHFCEMAADYHTDTPHVLDYIEYPGLEERRRFVNAYLSSSVDTSQPRRLQIYPPQSSSRFFC TEVKEHVNKIEFDYSDYARQRLDQYWLKKSTLFASSAKTTTGKEPESEVAAADKEGKESSVSTESASDESAGAKQQSSNQQGVFRKFKRYLGFTNVFRRN AGTSHNNPAKSSDQPPPAHPDAPDASKTTHD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74320			Protein kinase superfamily pro...		Lus10005386 [exp]	0	1
AT5G10620			methyltransferases (.1)		Lus10026980 [exp]	9.8	0.7951
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10005480 [exp]	10.5	0.7836
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	14.2	0.7805
AT1G26660			Prefoldin chaperone subunit fa...		Lus10026631 [exp]	15.4	0.7753
AT3G08890			Protein of unknown function, D...		Lus10022674 [exp]	17.0	0.7673
					Lus10008388 [exp]	22.5	0.7478
AT5G04980			DNAse I-like superfamily prote...		Lus10028884 [exp]	26.6	0.7649
AT4G19645			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10036199 [exp]	29.2	0.6802
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	30.5	0.7479
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10000601 [exp]	32.9	0.7612

Compare expression of checked genes

Lus10005386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.