Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13650 382 / 3e-133 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G07290 293 / 7e-97 GONST2 golgi nucleotide sugar transporter 2 (.1) AT1G21870 50 / 1e-06 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 46 / 2e-05 EamA-like transporter family protein (.1) AT1G76340 42 / 0.0006 GONST3 golgi nucleotide sugar transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024126 [exp] 575 / 0 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005865 [exp] 291 / 3e-96 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10001205 [exp] 291 / 4e-96 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1) Lus10025645 [exp] 49 / 4e-06 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10029663 [exp] 47 / 2e-05 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10042700 [exp] 46 / 2e-05 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10020119 [exp] 45 / 6e-05 AT4G31600 530 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10026922 [exp] 44 / 0.0002 AT4G31600 517 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10017759 [exp] 43 / 0.0003 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106400 [exp] 474 / 7e-168 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.005G062900 [exp] 471 / 1e-166 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.009G044000 [exp] 302 / 2e-100 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1) Potri.018G127400 [exp] 60 / 9e-10 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.018G026600 [exp] 55 / 3e-08 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.006G255400 [exp] 52 / 2e-07 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.002G084500 [exp] 45 / 5e-05 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.010G057600 [exp] 45 / 7e-05 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.008G177700 [exp] 44 / 8e-05 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005387 pacid=23155603 polypeptide=Lus10005387 locus=Lus10005387.g ID=Lus10005387.BGIv1.0 annot-version=v1.0 ATGGGTACAAGGTCTCTTTCCATCAAGTCTCCTGATTCTCATTACGAAAGAGATCTGGCGGAGGGAGTAGGTAAAGTTAGCCGAAGTGGAGGAAGCTTCA AAGATCATGAATCCGGTGTGGTTGTAGACCAGAGGTCCAGTCCATTGAAAAGGGAAGCAGTCAACAGGTCGCCATTTGCAATGAAGTCGCATGGAAATGA AGAGATTGATTTGGAAGATGGAAAGCTGGAAAAGCCTGGAGATAAAGTTATACGCAGTAACAAAGTTACAATACAAAATCAGGCCTTATTATCTGGCCTT GCATATTGTATTTCCTCCTGCAGCATGATACTGGTCAACAAATTTGTCCTCTCCAGCTATAACTTCAATGCTGAATTTTATTTCAGTACTCATTGTATCC ATGTTGAGCTTCCTGGGCCTAATTCAACAGAACCACTAACATGGAGATTACTTAAAGTCTGGTTGCCGGTGAATGTCATATTTGTTGGAATGCTCATCAC AAGCATGTTTAGTTTGAAGTATATTAATGTCGCCATGGTTACAGTATTAAAGAATGTAACTAACGTTATTACTGCGGTTGGCGAGATGTATCTACTCCAG AAGCACCATGATAATAGAATGTGGGTAGCTTTATTCTTAATGATCATTTCAGCAATATCTGGAGGGCTCACTGATCCATCATTTCATGCCATTGGCTATA CATGGCAGATCATAAACTGCTTTCTGACAGCATCTTATTCATTGACTCTACGTAGAGTGATGGACACTGCGAAGCACGTTACAAAATTGGGGAACTTGAA CGAGTTCACAATGGTCTTGCTCAACAACACACTTTCTTTGCCTCTAGGGCTTGTTCTGATATTTGTATTCAATGAGGTGGACTATCTCTCCACGACCCCT CTTTTGAGATTACCTGGCTTCTGGTCAGTAATGACGTTGAGCGGGTTCTTGGGTCTCGGCATCAGCTTCACTTCTATGTGGTTTCTTCACCAAACAGGAG CTACCACATACAGGCTCACTGAACAAGATTCCTCTATCAGTAGCGGGCATCCTATTGTTCAAAGTACCCACAAGCTTGGAGAACTCCGCTAG
AA sequence Show only first row Show all	>Lus10005387 pacid=23155603 polypeptide=Lus10005387 locus=Lus10005387.g ID=Lus10005387.BGIv1.0 annot-version=v1.0 MGTRSLSIKSPDSHYERDLAEGVGKVSRSGGSFKDHESGVVVDQRSSPLKREAVNRSPFAMKSHGNEEIDLEDGKLEKPGDKVIRSNKVTIQNQALLSGL AYCISSCSMILVNKFVLSSYNFNAEFYFSTHCIHVELPGPNSTEPLTWRLLKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLLQ KHHDNRMWVALFLMIISAISGGLTDPSFHAIGYTWQIINCFLTASYSLTLRRVMDTAKHVTKLGNLNEFTMVLLNNTLSLPLGLVLIFVFNEVDYLSTTP LLRLPGFWSVMTLSGFLGLGISFTSMWFLHQTGATTYRLTEQDSSISSGHPIVQSTHKLGELR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Lus10005387 [exp]	0	1
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10013095 [exp]	2.4	0.8646
AT3G24090			glutamine-fructose-6-phosphate...		Lus10020198 [exp]	32.4	0.8510
AT1G49790			F-box associated ubiquitinatio...		Lus10038938 [exp]	49.3	0.8125
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008205 [exp]	52.5	0.8224
AT3G18570			Oleosin family protein (.1)		Lus10017992 [exp]	68.7	0.8183
AT3G24090			glutamine-fructose-6-phosphate...		Lus10026998 [exp]	70.8	0.8033
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	74.2	0.8324
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10037560 [exp]	85.2	0.8158
AT2G37840			Protein kinase superfamily pro...		Lus10021493 [exp]	86.9	0.8016
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028502 [exp]	97.8	0.8156

Compare expression of checked genes

Lus10005387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.