Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07020 140 / 1e-40 proline-rich family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024125 [exp] 298 / 3e-102 AT5G07020 241 / 3e-80 proline-rich family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192800 [exp] 149 / 3e-44 AT5G07020 202 / 4e-65 proline-rich family protein (.1) Potri.001G032200 [exp] 136 / 1e-39 AT5G07020 187 / 9e-60 proline-rich family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005388 pacid=23155598 polypeptide=Lus10005388 locus=Lus10005388.g ID=Lus10005388.BGIv1.0 annot-version=v1.0 ATGGCTCTGGCATGTGCCTCTTCTTCGCAGGCAATAATCTCATCTGCCAATTTCACAGCTTCTTCTAATAACAGGTTTTCCAGGGTCAGGGCACGCCACA GTAAGCGGCAAAGTTTGAAGCTTTTCACTGCCAGAGCTTCTTCCTCTGAGGCTGATCCTGATTGCAATTCAGAAGAATGTGCTCCTGAGAAGGAGGTTGG GAAAGTGAGTATGGAATGGTTGGCTGAGGAGAAAACCAAAGTGGTTGGCACATTTCCACCTCGTACTCGTGGTGGTCGTGGCTGGACCGGCTATGTTGAG AAAGACACCGCCGGCCAGACCAACATCTATTCCGTTGAGCCAGCAATTTATGTAGCCGAGAGTGCAATAAGTTCAGGGACTGCAGGTTCCTCCTCAAGCG GTGCTGAAAACACAGCTGCAATCACCGGTGGCCTTGCCCTCATTGCTCTCGCCGCAGCTTCCTCGATTCTCATTCAAGTGAACAAGAACCCACCTCAGGT GCAGACGACAGTTGAATACAATGGTCCATCTTTGACCTACTACATTAACAAGTTCAAACCACCAGAGGTCGTCGTCCAAACTGCATTGCCTACTGAAACT GAAACTGAATCTGCACCACCTGTACTCACAGGTTCCTCCGAGCCAGAAGCTCCACCGGCTGAGGTTCAGTCTGAGCTCCAGCCTGAATCTTCGCCTGCAG CTGAGATCACAGATGCTACGCCAGTTGTGGTTCAATCAGAACTCCAGCCTGAATCTGCGACCTCGGCTGAGAATACAGTTTCTTAG
AA sequence Show only first row Show all	>Lus10005388 pacid=23155598 polypeptide=Lus10005388 locus=Lus10005388.g ID=Lus10005388.BGIv1.0 annot-version=v1.0 MALACASSSQAIISSANFTASSNNRFSRVRARHSKRQSLKLFTARASSSEADPDCNSEECAPEKEVGKVSMEWLAEEKTKVVGTFPPRTRGGRGWTGYVE KDTAGQTNIYSVEPAIYVAESAISSGTAGSSSSGAENTAAITGGLALIALAAASSILIQVNKNPPQVQTTVEYNGPSLTYYINKFKPPEVVVQTALPTET ETESAPPVLTGSSEPEAPPAEVQSELQPESSPAAEITDATPVVVQSELQPESATSAENTVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	0	1
AT5G07020			proline-rich family protein (....		Lus10024125 [exp]	1.0	0.9877
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	2.0	0.9768
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10020326 [exp]	2.8	0.9609
AT3G25805			unknown protein		Lus10022435 [exp]	3.0	0.9672
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10017401 [exp]	4.0	0.9494
AT5G01920		STN8	State transition 8, Protein ki...		Lus10014183 [exp]	4.2	0.9596
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10010200 [exp]	4.6	0.9508
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	5.0	0.9603
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10020553 [exp]	5.7	0.9459
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	6.0	0.9492

Compare expression of checked genes

Lus10005388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.