Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07040 152 / 8e-48 RING/U-box superfamily protein (.1) AT5G53110 110 / 3e-29 RING/U-box superfamily protein (.1) AT2G35910 102 / 9e-28 RING/U-box superfamily protein (.1) AT2G25409 95 / 3e-25 unknown protein AT1G28040 98 / 4e-25 RING/U-box superfamily protein (.1) AT2G46495 98 / 8e-25 RING/U-box superfamily protein (.1) AT2G46493 91 / 2e-23 RING/U-box superfamily protein (.1) AT5G06490 91 / 2e-23 RING/U-box superfamily protein (.1) AT2G25410 94 / 3e-23 RING/U-box superfamily protein (.1) AT3G61550 89 / 2e-22 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024124 [exp] 279 / 9e-98 AT5G07040 190 / 2e-62 RING/U-box superfamily protein (.1) Lus10003400 [exp] 115 / 1e-33 AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) Lus10019018 [exp] 112 / 3e-30 AT5G53110 332 / 4e-112 RING/U-box superfamily protein (.1) Lus10012628 [exp] 110 / 2e-29 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10023086 [exp] 107 / 4e-28 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1) Lus10032382 [exp] 105 / 2e-27 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10041079 [exp] 92 / 2e-23 AT3G61550 239 / 1e-80 RING/U-box superfamily protein (.1) Lus10036404 [exp] 84 / 1e-21 AT3G61550 149 / 2e-46 RING/U-box superfamily protein (.1) Lus10010124 [exp] 79 / 8e-20 AT2G25409 86 / 1e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192700 [exp] 156 / 4e-49 AT5G07040 194 / 3e-64 RING/U-box superfamily protein (.1) Potri.001G032300 [exp] 140 / 9e-43 AT5G07040 143 / 5e-44 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 122 / 5e-34 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 120 / 3e-33 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.015G017800 [exp] 115 / 3e-31 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.012G011500 [exp] 112 / 3e-30 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1) Potri.001G091700 [exp] 109 / 5e-29 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1) Potri.003G139900 [exp] 107 / 2e-28 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 100 / 1e-27 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.010G243400 [exp] 100 / 2e-27 AT2G35910 152 / 4e-47 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10005389 pacid=23155610 polypeptide=Lus10005389 locus=Lus10005389.g ID=Lus10005389.BGIv1.0 annot-version=v1.0 ATGCTCGCTTCCTACATCTGCGTACGCCTCAAGATTAGTAGCAGCAGCAGCGGAAGCACCACCAGCCACCACTTGGACGAGCAGGACGTTATCGTCCACA ATTACCGTTACCAGCTCCACCACCAGCTCCGCCGCGACAACTCTTCCTCCGAACTGGTGCCGGAGGTTGTGGCTGGGCTGGATCCGACCGCGATCGACTC GCTGCCCAAGATTGTCTTGGGGGAGAGTAAGCGTATTCCCAGGCCCAACAACGGCCCATGTTCCATTTGCTTGGCTGACTACCGGGCTAATGATACGCTG CGATGCATACCAGAATGCAACCACTGCTTCCATGCCGATTGCGTCGACGAGTGGCTCAGGGTCACCGCCACGTGTCCTTTGTGTCGGGTTTCGCCGGCTC CGACTCCGGTGGCTTCTCCGTTGTCGGAGCTAGTACCGTTGGCGGTTCATGTCGCTAGGTAA
AA sequence Show only first row Show all	>Lus10005389 pacid=23155610 polypeptide=Lus10005389 locus=Lus10005389.g ID=Lus10005389.BGIv1.0 annot-version=v1.0 MLASYICVRLKISSSSSGSTTSHHLDEQDVIVHNYRYQLHHQLRRDNSSSELVPEVVAGLDPTAIDSLPKIVLGESKRIPRPNNGPCSICLADYRANDTL RCIPECNHCFHADCVDEWLRVTATCPLCRVSPAPTPVASPLSELVPLAVHVAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	0	1
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	2.8	0.8352
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10037926 [exp]	2.8	0.7987
AT5G21050			unknown protein		Lus10001150 [exp]	7.1	0.8592
AT4G30400			RING/U-box superfamily protein...		Lus10019973 [exp]	10.7	0.8148
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	11.0	0.8005
AT1G04280			P-loop containing nucleoside t...		Lus10022217 [exp]	11.8	0.7470
AT1G17100			SOUL heme-binding family prote...		Lus10029117 [exp]	12.0	0.7820
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	14.5	0.7609
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10016354 [exp]	15.3	0.7720
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10025797 [exp]	15.5	0.7885

Compare expression of checked genes

Lus10005389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.