Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21240 783 / 0 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 781 / 0 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT1G65060 665 / 0 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 629 / 0 4CL5 4-coumarate:CoA ligase 5 (.1) AT4G05160 375 / 4e-124 AMP-dependent synthetase and ligase family protein (.1) AT1G62940 347 / 3e-113 ACOS5 acyl-CoA synthetase 5 (.1) AT1G20510 333 / 6e-108 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT4G19010 332 / 3e-107 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 326 / 7e-105 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 316 / 6e-101 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024123 [exp] 997 / 0 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1) Lus10026143 [exp] 943 / 0 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10008677 [exp] 918 / 0 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10021431 [exp] 365 / 4e-120 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 363 / 2e-119 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 348 / 1e-113 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10025842 [exp] 343 / 2e-111 AT1G62940 793 / 0.0 acyl-CoA synthetase 5 (.1) Lus10026544 [exp] 332 / 2e-107 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10038259 [exp] 330 / 2e-106 AT1G62940 769 / 0.0 acyl-CoA synthetase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036900 [exp] 805 / 0 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.006G169700 [exp] 799 / 0 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.003G188500 [exp] 782 / 0 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.018G094200 [exp] 781 / 0 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.019G049500 [exp] 687 / 0 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.001G055700 [exp] 379 / 3e-125 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.017G112800 [exp] 365 / 2e-120 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 364 / 6e-120 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 352 / 4e-115 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 341 / 1e-110 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10005390 pacid=23155611 polypeptide=Lus10005390 locus=Lus10005390.g ID=Lus10005390.BGIv1.0 annot-version=v1.0 ATGGAATCCAACCAGATTCAGCTGAACCCTGCGGCGCCGGAAAAGCAGGAGGAATTCATTTTCCGTTCGAAATTGCCGGACATCGACATTCCCAACCACC TATCCCTCCATTCCTACATCTTCCAGAACATCTCCAACCATGCATCCCGCCCCTGCCTGATCAATTCCATCACCGGAGACGTCTACACCTACGCCGATGT CCACCTGACCTCCCGCCGTGTCGCCGCCGGACTCGACAAGCTCAGCGTCCGTCAGGGTGATGTGATTATGCTCCTCCTTCCTAACTGCCCCCAATTCGTG CTCGCCTTCCTCGGCGCTTCTTTCAGGGGAGCCATTGCCCCCGCCGCCAACCCTTTCTTCCCCCCCGCCGAGATCTCCAAGCAGGCCAAGGCCTCCGGGG CTAAATTGGTCATTACTCAGTCCGCCTTCGCCGAAAAAGTCAAGGATCTCGCTGATTCGATCAAGGTCGTGTGTGTGGATTCAACTCCGTTTGATTGGTG CTTGCATTTCTCTGAATTGGCTGATTCCGACGAGGCGGCGGCTCCGGAGGTAGAGATCAACCCCGACGACGTTGTAGCTCTGCCTTACTCGTCCGGGACC ACCGGATTACCGAAAGGAGTGATGCTGACGCACAAGGGGCTGGTGACCAGCGTGGCGCAGCAGGTTGATGGAGAGAATCCGAATCTGTATTTCCACTCGG AGGACGTGATCCTATGCGTGCTGCCAATGTTCCACATATACGCACTGAACTCGATAATGCTCTGCGGTCTTCGGGTCGGGGCGGCGATCCTAATCATGCC CAAGTTCGACATCGGATCCCTTCTAGAGCTGATCCAAAGGTACAGGATCACGATAGGGCCGATGGTGCCGCCGGTGGTGCTGTCGATCGCGAAGTCAACG GAGACGGAGAAGTACGACTTGTCGTCGATTAGGATGTTGAAGTCCGGTGCGGCGCCGTTGGGGAAGGAGCTGGAGGATGCTGTCAGAAACAAATTCCCAA ATGCCAGACTTGGCCAGGGATACGGAATGACAGAGGCCGGACCAGTGCTGTCAATGTGCTTGGCATTCGCCAAGGAACCATTCGAGATCAAAGCAGGTTC GTGTGGCACCGTTGTCAGGAATGCCGAGATGAAGATCGTCGACCCTGACACTGGATCCTCCCTTCCCAGAAACCAACCTGGAGAGATTTGTATCCGAGGA GACCAAATCATGAAGGGGTACCTGAATGACCCTGAATCCACATCAGCAACCATTGACAAACAAGGGTGGCTACACACAGGGGACATTGGCTACATTGACG ACGACGACGAGCTCTTCATTGTCGATAGGTTGAAGGAGATCATTAAGTACAAAGGGTTCCAGGTTGCTCCTGCTGAACTTGAAGCCTTACTTGTTGCTCA CCCTCAGATATCTGATGCAGCTGTTGTCGGGATGAAAGATGAGTCAGCAGGGGAAATCCCAGTTGCATTTGTGGTAAAAGAAGACAACTCCGAGCTCACA GAGGATGCAATCAAGCAGTACATCTCGAAACAGGTTGTGTTCTACAAGAGAATAGGAAGAGTGTTCTTCAGGGATTCTATCCCAAAGGCACCCTCCGGCA AAATATTGAGGAAGAATTTGAGAGCAGAGTTTGCCAATGGTTTAAGAAACTGA
AA sequence Show only first row Show all	>Lus10005390 pacid=23155611 polypeptide=Lus10005390 locus=Lus10005390.g ID=Lus10005390.BGIv1.0 annot-version=v1.0 MESNQIQLNPAAPEKQEEFIFRSKLPDIDIPNHLSLHSYIFQNISNHASRPCLINSITGDVYTYADVHLTSRRVAAGLDKLSVRQGDVIMLLLPNCPQFV LAFLGASFRGAIAPAANPFFPPAEISKQAKASGAKLVITQSAFAEKVKDLADSIKVVCVDSTPFDWCLHFSELADSDEAAAPEVEINPDDVVALPYSSGT TGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFDIGSLLELIQRYRITIGPMVPPVVLSIAKST ETEKYDLSSIRMLKSGAAPLGKELEDAVRNKFPNARLGQGYGMTEAGPVLSMCLAFAKEPFEIKAGSCGTVVRNAEMKIVDPDTGSSLPRNQPGEICIRG DQIMKGYLNDPESTSATIDKQGWLHTGDIGYIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLVAHPQISDAAVVGMKDESAGEIPVAFVVKEDNSELT EDAIKQYISKQVVFYKRIGRVFFRDSIPKAPSGKILRKNLRAEFANGLRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	0	1
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10032998 [exp]	1.4	0.9416
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10009930 [exp]	2.6	0.9070
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	3.2	0.9405
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	3.5	0.9311
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10033524 [exp]	4.5	0.9224
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	5.5	0.9179
AT5G19860			Protein of unknown function, D...		Lus10013752 [exp]	6.6	0.8684
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	7.6	0.8615
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	7.7	0.9078
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	9.6	0.8562

Compare expression of checked genes

Lus10005390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.