Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041636 [exp] 44 / 1e-05 ND / Lus10024084 [exp] 44 / 3e-05 ND / Lus10005395 [exp] 43 / 5e-05 ND / Lus10005397 [exp] 39 / 0.001 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005391 pacid=23155612 polypeptide=Lus10005391 locus=Lus10005391.g ID=Lus10005391.BGIv1.0 annot-version=v1.0 ATGTCATTTTCTGGCAATCCAATATTGAATCATCCATCCATTTCTCTCACTCACTCACTCACTCACTCACTCCTACTCTTCATTCTTCGCCATCCAAATG AGCCCGCCCCCGCCGATGAAATAGTGGCGGAGCTTCGCAACGACATCCAGGAGCAGAACAAGCAGCTGGACGAGGCCTATGCGGAGATCGACGCCAAGGA CAAGCAGCTCAAAGAAAAGGACAAGGAGATCGCCGAGCTTAAGAAGAAGGCTCTTGAAGGCGGCGGCGGAGATGCGGGAGAAAGCCTGACCGCCGACGAG ATCGTGGAAGAGCTGAGGAACGACATCAGGGAGCAGAACAAGCAGCTGGACGAGGCGTACGCTGAGATTGACGCTAAGGACAAGCAGATCGCGGATCTCA AGAAACAGCTTGCTGCTTCTCAATCTGGCGGCGGTGGAGGAAGCAGCGCCGCCTCCGATGCGGAGGAGATAAAGAATTTGAAGGATCAGGTGGCTCGTCT GAAAGCTGCTCTCAACGCCATGCTTGATGGCTGA
AA sequence Show only first row Show all	>Lus10005391 pacid=23155612 polypeptide=Lus10005391 locus=Lus10005391.g ID=Lus10005391.BGIv1.0 annot-version=v1.0 MSFSGNPILNHPSISLTHSLTHSLLLFILRHPNEPAPADEIVAELRNDIQEQNKQLDEAYAEIDAKDKQLKEKDKEIAELKKKALEGGGGDAGESLTADE IVEELRNDIREQNKQLDEAYAEIDAKDKQIADLKKQLAASQSGGGGGSSAASDAEEIKNLKDQVARLKAALNAMLDG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005391 [exp]	0	1
AT2G36410			Family of unknown function (DU...		Lus10027724 [exp]	1.4	0.8842
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10023915 [exp]	2.0	0.8782
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	2.8	0.8990
AT4G09890			Protein of unknown function (D...		Lus10005802 [exp]	3.5	0.8697
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	7.1	0.8801
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10040122 [exp]	8.9	0.8464
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024172 [exp]	9.4	0.8640
AT4G00290			Mechanosensitive ion channel p...		Lus10018822 [exp]	10.5	0.8305
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10040360 [exp]	11.0	0.8414
AT1G34770			unknown protein		Lus10033452 [exp]	11.3	0.8132

Compare expression of checked genes

Lus10005391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.