Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024122 [exp] 1091 / 0 ND / Lus10024121 [exp] 619 / 0 ND / Lus10029057 [exp] 606 / 0 ND / Lus10005393 [exp] 526 / 0 ND / Lus10038309 [exp] 452 / 1e-152 ND / Lus10022836 [exp] 430 / 3e-146 ND / Lus10006341 [exp] 310 / 1e-99 ND / Lus10008536 [exp] 290 / 3e-93 ND / Lus10023559 [exp] 287 / 3e-89 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047300 [exp] 484 / 2e-165 ND / Potri.001G388801 [exp] 468 / 3e-159 ND / Potri.001G388450 [exp] 466 / 1e-158 ND / Potri.001G387900 [exp] 462 / 4e-157 ND / Potri.001G388200 [exp] 462 / 7e-157 ND / Potri.001G388600 [exp] 460 / 4e-156 ND / Potri.001G388100 [exp] 451 / 2e-153 ND / Potri.011G108300 [exp] 425 / 9e-143 ND / Potri.001G388900 [exp] 415 / 7e-139 ND / Potri.011G108200 [exp] 360 / 2e-117 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0122 [flax] [poplar] UTRA PF12143 [flax] [poplar] PPO1_KFDV Protein of unknown function (DUF_B2219) CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase CL0205 [flax] [poplar] PF12142 [flax] [poplar] PPO1_DWL Polyphenol oxidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10005392 pacid=23155607 polypeptide=Lus10005392 locus=Lus10005392.g ID=Lus10005392.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTTAGTAGTATGATTTCAACTCCATCGCTCAACACCACCGCCATTAACCCAAAAGCTTTCCAGCTTACCAAACTCCCTACCCACCACATCG GCTCCCTCAGAAACAAATCACTCAACATTATTACCTGCAACGCCAACAGTAGCCAAGATAACAACCCAACCTCCCGGCGAGACCTCCTCCTCGGCATCGG CGGAGCCGCCGCAGCCGCCGCCACATTCACGGTGGACCCAACTTTTGCGAGGCCAATCACGGGGCCCAGCATCGACACGTGCGTGCTGGCCACTGCAAAT GATCTGAAAATCGCATGCTGCCCTCCTTCCTTCGCCGGGAAAGACATTGCCGACTTCCAGCTGCCCTCAGCGTCGGAGCCCCTCCGGATCCGAAGACCCG CTCACTTGGCCAGCCAGGACCCGGAGTTCGTGGCCAAGTACGAGAAGGCCATCAAGGCAATGAAGTGTCTCCCTGACGACGACCCACGTAGCTACGTTCA GCAAGCCAGGGTCCACTGTGCCTACTGCAACGGCTCCTATGTCCAGGCAAACGACTCCAACAAAGGCTTGCAGGTTCACTTCTCTTGGCTCTTCCTCCCT TCCCACCGCTACTACATGTACTTCTACGAGCGCATCCTGGGAAAACTCATCGACGACCCGACATTCGCGCTCCCGTTCTGGAACTGGGACCACGAGGACG GCATGCCCATCGCCGACATGTTCCTCAAACCCGAATCTCCGCTCTACGATCCGCTCCGTAACCCGGCCCACGTGACCCCACCGTTTAACCTGCTGGACTT GGACTGGAACAAGGTTGACGTCGTGGATCGGACCAAGGAGGAGCAGGTGCGGATCAACTACGCTGTGGTGTACAAGAATATGGTGTCGGGAGCCAAGAAG CGGTCCGAGTTCTTCGGGGCAAAGTACCGGGCTGGTGGCGACGTACCCGTGAGGGCTTCTTCCGGGTCGTGTGAGACTCTGCACAACCCGGCCCACATAT GGGTCGGAGATAGGAACAGGAAATTGGGTGAAGACATGGGCAATTTCTATTCCTCCGGGCGGGACCCACTGTTTTACGTGCATCATGGTAACGTTGACCG GATGTGGAACGTGTGGAAAGGCATTGGCAAGTTCCGGTTTGACTTCGACGATTATGACTACTTGAACGCCTCATTTTTGTTCTATGATGAGAATAAAAAC CCGGTTCGCGTCAAGGTTAAGGACTGCCTCGACAACAAGCTCATGCGGTACGATTACGAGGAGCGCCCACTCCCGTGGAGGAACTTCAAGCCAACTTCGG CGCCCGTCGCCAGACTTTTCGGAGGGGAGAAGGAGGCCAACGCATCACCGGCGGAGGTGGAGCTGACACCGCTGACTGAATTCCCCCTGGTGCTGACCAA GGCGACGAGCGTGTCGGTGGCGAGGCCTAAGAAGTCGAGGAGCGCCGCGGAGAAGGAAGCGAAGAGCGAGGTGCTGGTTGTGTACGGGGTCGAAATTGAA GGGGACAAGGTTGTAAAGTTTGACGTGGTGGTCAACGATGACCCCGCTTCCCCTAGCACTCCGGACAAGATCCAGTACGCGGGGAGCTTCGTTAACGTCC CTCATGACGCCATGAAGTTCTCGAGCAATCTGAGGCTTGATATCACGGAGCTCGTTGGCGATATCGGAGCCGACGACGATGATGAGCTGGTGGTGACCCT GGTGCCTAGGATTACCGATGGGCCGATCTCCATCGCCGGCGTCAGGATTGAGCTCCAGGGGTCTTAG
AA sequence Show only first row Show all	>Lus10005392 pacid=23155607 polypeptide=Lus10005392 locus=Lus10005392.g ID=Lus10005392.BGIv1.0 annot-version=v1.0 MASLSSMISTPSLNTTAINPKAFQLTKLPTHHIGSLRNKSLNIITCNANSSQDNNPTSRRDLLLGIGGAAAAAATFTVDPTFARPITGPSIDTCVLATAN DLKIACCPPSFAGKDIADFQLPSASEPLRIRRPAHLASQDPEFVAKYEKAIKAMKCLPDDDPRSYVQQARVHCAYCNGSYVQANDSNKGLQVHFSWLFLP SHRYYMYFYERILGKLIDDPTFALPFWNWDHEDGMPIADMFLKPESPLYDPLRNPAHVTPPFNLLDLDWNKVDVVDRTKEEQVRINYAVVYKNMVSGAKK RSEFFGAKYRAGGDVPVRASSGSCETLHNPAHIWVGDRNRKLGEDMGNFYSSGRDPLFYVHHGNVDRMWNVWKGIGKFRFDFDDYDYLNASFLFYDENKN PVRVKVKDCLDNKLMRYDYEERPLPWRNFKPTSAPVARLFGGEKEANASPAEVELTPLTEFPLVLTKATSVSVARPKKSRSAAEKEAKSEVLVVYGVEIE GDKVVKFDVVVNDDPASPSTPDKIQYAGSFVNVPHDAMKFSSNLRLDITELVGDIGADDDDELVVTLVPRITDGPISIAGVRIELQGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005392 [exp]	0	1
					Lus10024122 [exp]	1.0	0.9207
AT4G15620			Uncharacterised protein family...		Lus10031998 [exp]	10.2	0.8038
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	10.7	0.8229
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	11.6	0.8000
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10041595 [exp]	12.0	0.7823
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	13.4	0.8182
AT1G48870			Transducin/WD40 repeat-like su...		Lus10020846 [exp]	15.9	0.7847
AT1G12330			unknown protein		Lus10032197 [exp]	16.4	0.7733
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	17.1	0.7997
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10024498 [exp]	17.5	0.7445

Compare expression of checked genes

Lus10005392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.