Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024121 [exp] 872 / 0 ND / Lus10029057 [exp] 655 / 0 ND / Lus10005392 [exp] 510 / 3e-177 ND / Lus10024122 [exp] 510 / 3e-177 ND / Lus10038309 [exp] 338 / 1e-109 ND / Lus10022836 [exp] 291 / 2e-93 ND / Lus10006341 [exp] 279 / 9e-89 ND / Lus10008536 [exp] 260 / 9e-83 ND / Lus10023559 [exp] 235 / 1e-70 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G387900 [exp] 355 / 1e-116 ND / Potri.001G388450 [exp] 353 / 4e-116 ND / Potri.001G388200 [exp] 350 / 1e-114 ND / Potri.001G388600 [exp] 350 / 1e-114 ND / Potri.001G388801 [exp] 349 / 2e-114 ND / Potri.011G047300 [exp] 346 / 5e-113 ND / Potri.001G388100 [exp] 341 / 5e-112 ND / Potri.001G388900 [exp] 318 / 1e-102 ND / Potri.011G108300 [exp] 315 / 2e-101 ND / Potri.011G108200 [exp] 273 / 5e-85 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase CL0205 [flax] [poplar] PF12142 [flax] [poplar] PPO1_DWL Polyphenol oxidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10005393 pacid=23155593 polypeptide=Lus10005393 locus=Lus10005393.g ID=Lus10005393.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTAAATGCAGTAGTCTCTTCTTCACCTTCCACCAATGTTTACCGAAAACCCTCCCAACTCTCCGCCCCCACTAAGAAGCCAACCTTTGCCC TTCCAACTCCAAACAAATCCCGACTCACTGTTACTTGCAAATCTTCATCATCAAGCAGCAGCAATGTTGACCCTATGATGAACGAATCAGCAGCTTCCAG AAGAGATGTCCTCCTTGGTCTTGGAGCCGGTCTTTACGGAGCCTCTGCTCTAGTCGACCCATTCTCCACCGCCTTTGCCAGACCCATTGACGGGCCCAGC ATGGACGTGTGCAAGTTGGCAACAGCTACTCCTGGAAGTCGCATCGAGATCCAATGTTGCCCCCCAGCATTTGCGGGGAGGGAGTTCAAGAACTACCAGT TCCCAGACTCCTCGAAGCCCATGAGGATGAGAAGACCAGCTCATTTGGCAATGCAGGACAAAGTGTGGTTGGACAAGTACAAGCTGGCAATTCAGAGGAT GAAGTGCCTCCCTGCTGACGATCCACGTAGCTTCGTCCAGCAGGCCAGAGTTCACTGCGCTTACTGTAACGGCTCCTACGTCCAGGCCAACAACGTTGAG AAAGGCCTTCAAGTTCACTACTCGTGGTTCTTCCTCCCTTTCCATCGCATGTACCTCCACTTCTATGAGCGTATCTTGGGAAGTCTGATTGACGACCCAA GTTTCGCACTCCCCTTCTGGAACTGGGACCATGAAGATGGCATGGACATTCCTTCCATGTTCGTTGACCCGGAGTCCTCCATCTATGACGGCCTCCGCAA CAAGAAACATCTGCCCCCCAACAAGCCTCTCGATCTCTATTGGGACCGAGAGGTCGAAAACAAGCCAACACCCGAAATTGTCGAGGCCAACTATGGTATG ATCTATAACCGAATGGTATCCGGCGCCAAGAGAAGGCTAGAGTTCTTCGGAGGCAAGTATCGCGCTAATCAGGACACACCCGATCGATCCATGTCCGGAC AAAGTGAGCTTCTCCACAACATGGCTCATCTCTGGGTAGGCACCCCGCAACCTCGGGGTGGTACCGACTTAGGTGAAGACATGGGCAACTTCTACTCTGC TGGGAGGGACCCACTTTTCTACGTCCATCACGGAAACGTCGACAGGCTGTGGAATGTCTGGAAGACTATTGGACAATACCGGTTTGACTTTGACGACTAC GACTACCTCAACGCCTCTTTCCTCTTCTATGACGAGAACAAGGATCTTATTAAGATCAAGGTGAAGGACGTTTTGGACACCAAGCCAATGAAATTCGACT ACGAGGATAGGCCGCTTCCTTGGAGGAATGCTAAGCCCACCCCTACCCCTGCTAATGCGGCTAGGACGGCAACCTCCAGAGTCTTCGGAACAGACAGTAT CGCAACCGCCAACGCGGCAACTGTGGGGCTCCAGGCGATCGAACCTCCGACGACCCTTCGAAGCTGA
AA sequence Show only first row Show all	>Lus10005393 pacid=23155593 polypeptide=Lus10005393 locus=Lus10005393.g ID=Lus10005393.BGIv1.0 annot-version=v1.0 MASLNAVVSSSPSTNVYRKPSQLSAPTKKPTFALPTPNKSRLTVTCKSSSSSSSNVDPMMNESAASRRDVLLGLGAGLYGASALVDPFSTAFARPIDGPS MDVCKLATATPGSRIEIQCCPPAFAGREFKNYQFPDSSKPMRMRRPAHLAMQDKVWLDKYKLAIQRMKCLPADDPRSFVQQARVHCAYCNGSYVQANNVE KGLQVHYSWFFLPFHRMYLHFYERILGSLIDDPSFALPFWNWDHEDGMDIPSMFVDPESSIYDGLRNKKHLPPNKPLDLYWDREVENKPTPEIVEANYGM IYNRMVSGAKRRLEFFGGKYRANQDTPDRSMSGQSELLHNMAHLWVGTPQPRGGTDLGEDMGNFYSAGRDPLFYVHHGNVDRLWNVWKTIGQYRFDFDDY DYLNASFLFYDENKDLIKIKVKDVLDTKPMKFDYEDRPLPWRNAKPTPTPANAARTATSRVFGTDSIATANAATVGLQAIEPPTTLRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005393 [exp]	0	1
					Lus10005394 [exp]	1.0	0.9948
AT1G06930			unknown protein		Lus10009929 [exp]	1.4	0.9886
					Lus10011622 [exp]	4.1	0.9649
AT5G54370			Late embryogenesis abundant (L...		Lus10033540 [exp]	5.2	0.9835
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	6.5	0.9787
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	6.9	0.9800
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	7.5	0.9783
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	8.1	0.9791
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10012157 [exp]	9.4	0.9724
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	9.8	0.9710

Compare expression of checked genes

Lus10005393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.