Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005397 [exp] 418 / 1e-150 ND / Lus10024084 [exp] 365 / 2e-129 ND / Lus10041636 [exp] 364 / 3e-129 ND / Lus10005398 [exp] 243 / 3e-82 ND / Lus10022893 [exp] 204 / 3e-66 ND / Lus10024931 [exp] 199 / 8e-64 ND / Lus10024932 [exp] 194 / 2e-62 ND / Lus10022894 [exp] 194 / 9e-62 ND / Lus10008233 [exp] 150 / 5e-43 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10005395 pacid=23155596 polypeptide=Lus10005395 locus=Lus10005395.g ID=Lus10005395.BGIv1.0 annot-version=v1.0 ATGACGACGGTCGCCGGATTACCGAAATACGTGGTGCTCAAATCCAAGCCCTCCGGGAAGTACCTTCACTTCCTATGGAACGACGAGTTCGGCGAATACT ACAAGGACTTGGGTGCCAAGCGCGACGTTGACCCAGTCAACCCTTTCGTGAAGTTTGAGGTGGTCCCCTCCACCGCCGACCCTACCCTCGTCCACCTCCG CTGCTCCTACAACAACAAGTTCATCCAGCTCATCAGCAAATATGGCGTCTCCTGGCTCTCCGCCACCGCCGATTCTGCCGTCGATGACCGCACCAAGGAG ACCTCCACCCTCTTCCAGCCCATCTTCCCCGCCGGCGAGCCCAACACCGTCGGGTTCCTGCACGTGCAGAGCAACCGCCACGTGCGCATCTTCTTCAACA AGGATTACAGCGACAGTATCAACAACGTTTCATGCGCCTACACCAACGACGGAACTGGTTTCCACCGCTTCGAGTTCGCTGCGTGGATGCCGTACGAGGA GGTGGTTAAGGCTAAGGACGAGGAGATCCAGAAGCTGAAGGCGCAGTCTGCGGACGGTGAGAGTCTGAGTGCTGATGCTATTGTGGAAGACCTGAGGAAG GACATAAGGGAGCAGAACGAGCAGCTGGAGGCGGCGTATAAGGAGATTGATGCCTTGAAAGCTGCCGCCAAAGGCAAGTGA
AA sequence Show only first row Show all	>Lus10005395 pacid=23155596 polypeptide=Lus10005395 locus=Lus10005395.g ID=Lus10005395.BGIv1.0 annot-version=v1.0 MTTVAGLPKYVVLKSKPSGKYLHFLWNDEFGEYYKDLGAKRDVDPVNPFVKFEVVPSTADPTLVHLRCSYNNKFIQLISKYGVSWLSATADSAVDDRTKE TSTLFQPIFPAGEPNTVGFLHVQSNRHVRIFFNKDYSDSINNVSCAYTNDGTGFHRFEFAAWMPYEEVVKAKDEEIQKLKAQSADGESLSADAIVEDLRK DIREQNEQLEAAYKEIDALKAAAKGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005395 [exp]	0	1
					Lus10005397 [exp]	1.0	0.9605
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	2.4	0.9459
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10024882 [exp]	3.6	0.9241
					Lus10026715 [exp]	3.9	0.9323
AT2G39725			LYR family of Fe/S cluster bio...		Lus10035952 [exp]	4.5	0.9258
AT1G74790			catalytics (.1)		Lus10033116 [exp]	5.7	0.9355
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	7.7	0.9327
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10000711 [exp]	7.9	0.9298
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	8.5	0.9294
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015518 [exp]	9.6	0.9091

Compare expression of checked genes

Lus10005395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.