Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005395 [exp] 417 / 1e-150 ND / Lus10041636 [exp] 349 / 2e-123 ND / Lus10024084 [exp] 340 / 4e-120 ND / Lus10005398 [exp] 241 / 3e-81 ND / Lus10022893 [exp] 202 / 1e-65 ND / Lus10024931 [exp] 197 / 5e-63 ND / Lus10024932 [exp] 193 / 6e-62 ND / Lus10022894 [exp] 191 / 6e-61 ND / Lus10008233 [exp] 151 / 2e-43 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10005397 pacid=23155606 polypeptide=Lus10005397 locus=Lus10005397.g ID=Lus10005397.BGIv1.0 annot-version=v1.0 ATGACGACGGTCGCCGGATTACCGAAATACGTGGTGCTCAAATCCAAGCCCTCCGGGAAGTACCTTCACTTCCTATGGAACGACGAGTTCGGCGAATACT ACAAGGACTTGGGTGCAAAGCGCGACGTTGACCCAGTCAACCCTTTCGTGAAGTTTGAGGTGGTCCCCTCCACCGCCGACCCTACCCTCGTCCACCTCCG CTGCTCCTACAACAACAAGTTCATCCAGCTCATCAGCAAATATGGCGTCTCCTGGCTCTCCGCCACCGCCGATTCTGCCGTCGATGACCGCACCAAGGAG ACCTCCACCCTCTTCCAGCCCATCTTCCCCGCCGGCGAGCCCAACACCGTCGGGTTCCTGCACGTGCAGAGCAACCGCCACGTGCGCATCTTCTTCAACA AGGATTACAGCGACAGTATCAACAGCGTTTCATGCGCCTACACCAACGACGGAACCAGTTTCCACCGCTTCGAGTTCGCTGCGTGGGTGCCGTACGAGGA GGTGGTTAAGGCTAAGGACGAGGAGATCCAGAAGCTGAAGGCGCAGTCTGCTGATCCTATTGTGGAAGACATGAGGAAGGGCATAATGGAGCAGAACAAG CAGCTGGAGGCGGCGTATAAGGAGATTGATGCCTTGAAAGCTGCCGCCAAAGGCAAGTGA
AA sequence Show only first row Show all	>Lus10005397 pacid=23155606 polypeptide=Lus10005397 locus=Lus10005397.g ID=Lus10005397.BGIv1.0 annot-version=v1.0 MTTVAGLPKYVVLKSKPSGKYLHFLWNDEFGEYYKDLGAKRDVDPVNPFVKFEVVPSTADPTLVHLRCSYNNKFIQLISKYGVSWLSATADSAVDDRTKE TSTLFQPIFPAGEPNTVGFLHVQSNRHVRIFFNKDYSDSINSVSCAYTNDGTSFHRFEFAAWVPYEEVVKAKDEEIQKLKAQSADPIVEDMRKGIMEQNK QLEAAYKEIDALKAAAKGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005397 [exp]	0	1
					Lus10005395 [exp]	1.0	0.9605
AT5G10820			Major facilitator superfamily ...		Lus10026890 [exp]	2.4	0.9422
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	3.2	0.9430
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Lus10040388 [exp]	3.5	0.9287
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10019531 [exp]	3.7	0.9239
AT5G49690			UDP-Glycosyltransferase superf...		Lus10027850 [exp]	5.9	0.9377
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	7.3	0.9323
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	7.7	0.9372
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	7.7	0.9396
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10023615 [exp]	8.4	0.9294

Compare expression of checked genes

Lus10005397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.