Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005395 [exp] 243 / 5e-82 ND / Lus10024084 [exp] 241 / 2e-81 ND / Lus10005397 [exp] 240 / 6e-81 ND / Lus10041636 [exp] 234 / 1e-78 ND / Lus10022893 [exp] 151 / 4e-46 ND / Lus10024931 [exp] 144 / 7e-43 ND / Lus10024932 [exp] 140 / 8e-42 ND / Lus10022894 [exp] 137 / 4e-40 ND / Lus10026703 [exp] 115 / 1e-31 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10005398 pacid=23155595 polypeptide=Lus10005398 locus=Lus10005398.g ID=Lus10005398.BGIv1.0 annot-version=v1.0 ATGATGACGGTAACCAAATTACCGAAAGACATGGTGCTCAAGTTCAAGTTCAGCGGGAACTACATTCACTACCTATGGAACGATGAGTTTGGAAACTACT GCAAGTACATGGGTGCCAAGCGTGACCTTGACCCAGTTAACCCCTTTGTGCACGTGGAGGTGGTCCCCTCCACTTCTGACCCCACCCTTGTCCATCTCCG CTGCTCCTACAATAACAAGTTCAACGAGCTTATCAGCAGCAGTGTCTCGTGGCTCTCCGCCACCACCAATTCCCCCAACGAGGACCGTACCAAGAAGACC TTCACCCTCTTCAAGCCCATCTTTCCCGCTAGCCAGCCACACACAGTCGGCTTCCTCCACATGCAGACCAACCACCAAGTGCGTACTTTCTTCAACAAGG ACTACGGTGACAGTATCAACATGGTTTGCGCCAAGAGCAACGACAACGGGATGCAGCTCTTTGAGTTTCCTGTGTGGGTTCAGTACGAGGACGTTATTAA GTTGAAGGATAGGGAGATCAAGACCAAGGACGAGGAGATCAAGGCTATGGATGGGGAGATCAAGGCCAAGGATGAGGAGATCTAG
AA sequence Show only first row Show all	>Lus10005398 pacid=23155595 polypeptide=Lus10005398 locus=Lus10005398.g ID=Lus10005398.BGIv1.0 annot-version=v1.0 MMTVTKLPKDMVLKFKFSGNYIHYLWNDEFGNYCKYMGAKRDLDPVNPFVHVEVVPSTSDPTLVHLRCSYNNKFNELISSSVSWLSATTNSPNEDRTKKT FTLFKPIFPASQPHTVGFLHMQTNHQVRTFFNKDYGDSINMVCAKSNDNGMQLFEFPVWVQYEDVIKLKDREIKTKDEEIKAMDGEIKAKDEEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005398 [exp]	0	1
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000792 [exp]	2.2	0.7802
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	8.5	0.6275
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	9.8	0.6275
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	11.0	0.6275
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	12.0	0.6275
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020358 [exp]	12.8	0.5188
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	13.0	0.6275
AT4G26466		LRE	lorelei (.1)		Lus10011066 [exp]	17.3	0.5676
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025522 [exp]	17.7	0.6189
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10035443 [exp]	19.5	0.6485

Compare expression of checked genes

Lus10005398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.