Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 471 / 1e-155 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G02780 205 / 1e-55 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 165 / 3e-42 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G16730 95 / 5e-20 AtTPS02 terpene synthase 02 (.1) AT4G16740 90 / 2e-18 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 89 / 4e-18 AtTPS10 terpene synthase 10 (.1) AT3G29410 85 / 8e-17 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61680 82 / 7e-16 ATTPS14 terpene synthase 14 (.1.2) AT3G25830 78 / 1e-14 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 78 / 1e-14 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024120 [exp] 1385 / 0 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014673 [exp] 461 / 1e-151 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 456 / 7e-149 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 442 / 3e-144 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 437 / 3e-142 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034229 [exp] 424 / 4e-137 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 417 / 3e-135 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 408 / 3e-131 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034232 [exp] 384 / 6e-120 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082700 [exp] 540 / 0 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 538 / 0 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 211 / 9e-58 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.002G052100 [exp] 201 / 2e-54 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 199 / 1e-53 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G118600 [exp] 138 / 6e-34 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 124 / 3e-29 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308200 [exp] 112 / 1e-25 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 108 / 3e-24 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.011G031800 [exp] 105 / 3e-23 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10005399 pacid=23155602 polypeptide=Lus10005399 locus=Lus10005399.g ID=Lus10005399.BGIv1.0 annot-version=v1.0 ATGAAGCTGCCGGGGAAGGATCAGGAAAAGCGTGTAAGGAAGATGAAGGAGTTGCTGAGGAAGGAGGTGGAGATTTCGGCTTCCCCCTACGACACAGCCT GGGTTTCCATGGTGGGTTGCGGCCAAACCGAGTTGGTAGCTCGGTTCCCGGAAAGCTTGAGATGGGTGATGGAGAATCAGCATGCTGACGGGTCATGGGC TTCCCATCCAACTGATCCACTCCTGGTCAAGGACTCTCTCTCGTCCACTCTCGCCTCCGTTCTCGCTCTTCGTAAGTGGGGTGTTGGAGACCAGCTCATT CATCGAGGATTGGAGTTCATAGGAGCTAACGCATGGGCAGCCAACGACAAGAACCAACGTACCCCAGTTGGGTTCGATGCCACATTTCCTGGGATGATGG AGTCTGCCACCGCCATGGGCCTCAACCTCCCAATCAACCCATCTTCCTTCCAACAAATGCTCCGTACGAGGGACCAACTTGTCCACACCGGCGAGTTGGG GTTGGGGGAAGTGGCATATGCGGCGGAAGGGTTGACCATGACCAAATTCAGCGGAGGGACGTGGAAATGGGAGGAGATGCTACGTAAGCACCAAAGAAAG AATGGATCTTTGTTCAATTCACCTTCTACGACGGCGGCTGCTCTTCTCCATCTCCACGACGACAAATCCTTGGCCTATTTGGACTCCATCCTCGCAACTT ACAACAACGCTCCTGCTGTGCCGACAGTTTACCCGATGGAGATATTGAGTCGGCTTGAGATGGTGGATAACCTCGTCAACCTCGGGATACATCAATACTT CACCCCCGAGATTACTTTCATTCTTGACGATATTTACAAATGTTGGGTCAAGAGGGATGAGCAATTATTCTCGGACATTGGTTGTCTTGCCAAGTCATTT CGGCTCCTACGTTTGAACGGATATCATGTTTCCTCTGATGTATTTGAAGGATTGGACAGAGAAGAAGACTACTTCAAGAGCATAAACACGCAATATAAAA GTACAGAAACTGTGTTGGAGCTGTACAAAGCTTCACTAAACACAACTCTACCGAGCGAACCCATTCTCGGCAGAATCAAGAACTGGACAACCTTTTACCT CGGAAAAATTACCACATCTTCACTACACGATTCGGCCAAGGATTGGAAGCTTATTCAAGAGGTGGAGTATGCACTCAAGTATCCTTACGCAAGTTTGGAA CGGATTGAAAACAGGCACAACATAGAGATAGCCGACGTGGACAATACTAACGTCAAACTTCTTAAAACATCGTACAGGTTCTCTAACACAGAAGATAAAG AGTGGGTGGAGTTTGCTGTTGAGGATTATAACAGATGCCAGTCCGTACAAAGGAAAGAACTCGAGCTACTCGAAAAGTGGGTGAAAGACTACAGAGTAGA AGAGCTCGAGTTTGCGAGACCCGGGCACGCTGATGCTAGGAGTTCATGGGCCAAGAACACTGTCCTTGTAACACTGGTTGATGATTTGTTTGATGTCGGC GGTTCTGAGGAGGAGCTTCTCAACTTTATTGAGTTGGTTAAAGCATGGGATGGATACAAGTCAGTAGGGTTCTGCTCCGAACAAGTGGAGATAGTTTTCA AGGCTGTCTACGAAACCACCAATGAGTATGTGGCAAAGGCTAGCCTTGTCCAAGGAAGATGTGTCAAAGATCACTTCATGGAAATGTGGCTTGTTCTGGT AGATTGCATGTGGGCAGAGTACGTCAGGGGAAGAGACAAGACAGTTCCAACAATGGAAGAATACATTGCCACGGGATATGTAAGCGTTGCATTGGGACCC GTCATCTTGGTCCCGATGTATTTCCTCGGTTGCAAGCTATCCGAGGAAGCTATCAAAAGCAAAGAGTACGACGACTTGTTTATGCACGTCAGCGTTGTCG CCCGCCTCCTGAACGATCTCGCCACCATCGGGAGGGAGATGGAGCAAGGGAAAGAGAACGGGCTGGCGCTGGTGATGATGCAAGAGAATGGGAAGATGAC AGAGGGAGAGGCAAGAAGGACGATACAGGAGATCATAGAGAAGCACAGGAAGGAACTTTTGAGGATGGTGGTTTTGAAAGAAGGGGATCAAGAAGAGGAA AGAAGTATAGTGGGGAGAGAAGTGAAGGAAGTGTTTTGGCAGACGAGCAAAATAGTGCATATGTTCTACATGTCCAAAGACGGTTTCTCTTCTCCTCATG AGATGATGGCGGCCATTGATTCCGTCATTTACAAACCTATCGTCTTGCCTCATCAACAAGTCTGTTCGGATTCGTTATTGTAA
AA sequence Show only first row Show all	>Lus10005399 pacid=23155602 polypeptide=Lus10005399 locus=Lus10005399.g ID=Lus10005399.BGIv1.0 annot-version=v1.0 MKLPGKDQEKRVRKMKELLRKEVEISASPYDTAWVSMVGCGQTELVARFPESLRWVMENQHADGSWASHPTDPLLVKDSLSSTLASVLALRKWGVGDQLI HRGLEFIGANAWAANDKNQRTPVGFDATFPGMMESATAMGLNLPINPSSFQQMLRTRDQLVHTGELGLGEVAYAAEGLTMTKFSGGTWKWEEMLRKHQRK NGSLFNSPSTTAAALLHLHDDKSLAYLDSILATYNNAPAVPTVYPMEILSRLEMVDNLVNLGIHQYFTPEITFILDDIYKCWVKRDEQLFSDIGCLAKSF RLLRLNGYHVSSDVFEGLDREEDYFKSINTQYKSTETVLELYKASLNTTLPSEPILGRIKNWTTFYLGKITTSSLHDSAKDWKLIQEVEYALKYPYASLE RIENRHNIEIADVDNTNVKLLKTSYRFSNTEDKEWVEFAVEDYNRCQSVQRKELELLEKWVKDYRVEELEFARPGHADARSSWAKNTVLVTLVDDLFDVG GSEEELLNFIELVKAWDGYKSVGFCSEQVEIVFKAVYETTNEYVAKASLVQGRCVKDHFMEMWLVLVDCMWAEYVRGRDKTVPTMEEYIATGYVSVALGP VILVPMYFLGCKLSEEAIKSKEYDDLFMHVSVVARLLNDLATIGREMEQGKENGLALVMMQENGKMTEGEARRTIQEIIEKHRKELLRMVVLKEGDQEEE RSIVGREVKEVFWQTSKIVHMFYMSKDGFSSPHEMMAAIDSVIYKPIVLPHQQVCSDSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10005399 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029369 [exp]	2.2	0.9814
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022191 [exp]	4.5	0.9773
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	5.1	0.9803
					Lus10015339 [exp]	6.5	0.9789
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10029827 [exp]	8.6	0.9571
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10026783 [exp]	10.6	0.9714
					Lus10012705 [exp]	11.5	0.9500
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	14.0	0.9681
AT1G17860			Kunitz family trypsin and prot...		Lus10007890 [exp]	14.1	0.9655
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10026949 [exp]	15.1	0.9568

Compare expression of checked genes

Lus10005399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.