Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23610 206 / 8e-66 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT3G50440 198 / 1e-62 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23600 192 / 9e-61 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23580 192 / 1e-60 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT2G23560 189 / 2e-59 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23620 188 / 5e-59 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23550 187 / 1e-58 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT2G23590 174 / 2e-53 ATMES8 methyl esterase 8 (.1) AT4G37150 172 / 5e-53 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT1G33990 165 / 5e-49 ATMES14 methyl esterase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005402 [exp] 407 / 1e-144 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10009203 [exp] 404 / 4e-143 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10009205 [exp] 357 / 2e-125 AT2G23580 194 / 3e-61 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005401 [exp] 336 / 1e-115 AT2G23600 184 / 5e-56 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10015532 [exp] 261 / 1e-87 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 241 / 1e-79 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10023326 [exp] 202 / 2e-64 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10038592 [exp] 176 / 5e-54 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10003511 [exp] 159 / 8e-47 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036800 [exp] 295 / 7e-100 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.007G036700 [exp] 274 / 1e-92 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.009G107500 [exp] 245 / 4e-81 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107200 [exp] 242 / 9e-80 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G037700 [exp] 199 / 5e-63 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037300 [exp] 193 / 1e-60 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133700 [exp] 186 / 3e-58 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 186 / 5e-58 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133600 [exp] 185 / 9e-58 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.004G116500 [exp] 167 / 2e-49 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005400 pacid=23145149 polypeptide=Lus10005400 locus=Lus10005400.g ID=Lus10005400.BGIv1.0 annot-version=v1.0 ATGAGAATCAGGCATTTTGTGCTAGTCCATGGAGCCTGCCACGGAGCTTGGTGCTGGTACAAAGTGATTTCGGAGTTAAAAGAAGCTGGTCATAAGGTCA CCGCTATAGACCTAGCTGCCTCCGGGATTAATCCCAAGCAAGTGGCGGATGTTCATTCTTCCCTTGTGGAATACTCTGAGCCGCTTCTTACTTTCTTGGA TTCTCTTCCTACCACTGATCATGACGACGACGAGGACAAGGTTATCGTGGTGGGTCACAGCCAGGGCGGGTATAGCCTGTGCATTGCTATGGAAAGGTTC CCTCAGAAGATCTCCCTTGGGGTCTTTGTTGCTGCCGCCATGCTTGGTCCTGATTTTACATACCAATTTGTTTCTCAAAAGGCTGCTGAACTGTCTCGGG ACTTCATGGACACTAAAATAATATTTGGGAATGGGCCAGACAAACCTCCAACAGCTGTGTTGGTTGGTCCCAAGTACATGGAGACAACTTCCTACCGCAG TTCCCCACGCCAGGACTTGGAGTTGGGATTAACATTGGTAAGACCAATTCCCACGTTTGATGAAGAACAAGCTGCAAAAGACTCGGTTGTGACGAAGGAC AGGTATGGAACAGTGGCTCGTGCATTTGTAATGTGTGATGAAGATGGAGATGGCACATTCCAGTGGTGGCAGATTAACAACAATCCTCCTGATGACTACA CTGTCATCCAAGGTTCCGATCACATGGTCATGTTTTCCAAACCTGTTCCCTTCTCCACTTATCTTCTCCAACTTGGAGCCAAATACTTTTGA
AA sequence Show only first row Show all	>Lus10005400 pacid=23145149 polypeptide=Lus10005400 locus=Lus10005400.g ID=Lus10005400.BGIv1.0 annot-version=v1.0 MRIRHFVLVHGACHGAWCWYKVISELKEAGHKVTAIDLAASGINPKQVADVHSSLVEYSEPLLTFLDSLPTTDHDDDEDKVIVVGHSQGGYSLCIAMERF PQKISLGVFVAAAMLGPDFTYQFVSQKAAELSRDFMDTKIIFGNGPDKPPTAVLVGPKYMETTSYRSSPRQDLELGLTLVRPIPTFDEEQAAKDSVVTKD RYGTVARAFVMCDEDGDGTFQWWQINNNPPDDYTVIQGSDHMVMFSKPVPFSTYLLQLGAKYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23610		ATMES3	ARABIDOPSIS THALIANA METHYL ES...		Lus10005400 [exp]	0	1
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10010262 [exp]	3.0	0.8924
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10020071 [exp]	4.0	0.8958
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	5.7	0.8822
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	7.3	0.8976
AT5G11480			P-loop containing nucleoside t...		Lus10022126 [exp]	8.8	0.8705
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	11.0	0.8705
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10006751 [exp]	11.1	0.8904
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031564 [exp]	11.6	0.8896
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10015317 [exp]	17.1	0.8845
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10032449 [exp]	22.4	0.8711

Compare expression of checked genes

Lus10005400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.