Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23600 184 / 6e-56 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT3G50440 181 / 1e-54 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23580 180 / 1e-54 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT2G23620 179 / 3e-54 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23610 173 / 5e-52 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT2G23560 168 / 5e-50 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT4G37150 167 / 8e-50 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT2G23550 167 / 2e-49 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT2G23590 164 / 2e-48 ATMES8 methyl esterase 8 (.1) AT5G10300 155 / 4e-45 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009205 [exp] 506 / 0 AT2G23580 194 / 3e-61 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10009203 [exp] 372 / 1e-128 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10005402 [exp] 369 / 2e-128 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005400 [exp] 337 / 1e-115 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10015532 [exp] 220 / 7e-70 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 214 / 1e-67 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10038592 [exp] 177 / 4e-53 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10023326 [exp] 166 / 4e-49 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10003511 [exp] 139 / 9e-38 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036800 [exp] 263 / 9e-86 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.007G036700 [exp] 246 / 4e-80 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.009G107500 [exp] 223 / 9e-71 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107200 [exp] 219 / 2e-69 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.005G133700 [exp] 183 / 1e-55 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 181 / 1e-54 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133600 [exp] 180 / 2e-54 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037700 [exp] 174 / 5e-52 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037300 [exp] 166 / 5e-49 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.011G082400 [exp] 165 / 8e-49 AT2G23590 254 / 4e-85 methyl esterase 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005401 pacid=23145146 polypeptide=Lus10005401 locus=Lus10005401.g ID=Lus10005401.BGIv1.0 annot-version=v1.0 ATGACGATCAGTAGGCATTTCGTACTACTTCATGGAGCCTGCAACGGCGCGTGGATCTGGTACAAAGTGAGTGCGCTGCTGAAAGAGGCTGGTCATAACG TCACCGCCATTGACCTGGCTTCTTCTGGGATCCACCCCAAGAAATGGCAAGAAGTTAATTCTTTTCTGGAATACTCTGAGCCCTTGCTTACATTCATGGA ATCTCTTCCTAGTGACGGCGAAAAGGTTGTCATTGTAGCTCACAGCCTCGGCGGCTATAGCGCTTCCATTGCCATGGAAAGGTTCCCTGAGAAGATCTCT CTTGGTATCTTTGTCACCGCCAGCATGCTCGGCCCTGATCTTAACTACGAACTTATGGCTGAGAAGTATGTTGAATTTGCTGCGCCGATGATGGACACTG TATTTACATATGGGAATGGCCCAGACAAAACACCAACCGTGGCGATGGTTGGTCCCAAGTACATGGAGGCTGTGAACTATCGGAAATCTCCCCGTGCGGT TGGTCATCCATTCGTTGACTCAAATACAATTGAAGACCTAGAGCTGGGATTAACATTGGTAAGACCAACTCCGGTTTTCGATCAAGAACAAGCTGCAATA GACACAAGAGTGACAAAGGAGAAATACGGAACTATTCCTCGGGTGTTTGTGCTTTGCGATGCTGAGTATAAGGGAGCATTCCAGTGGTGGCAAGTTAAGA ACAACCCTCCTGATGAACATATACTCATTGAAGAGTCTGATCACATGGTCATGTTGTCGCAACCTGGTCCCCTCGTTGATTATCTCCTCAAAGATGAGGT CATGTTCTTGCTCGGGCTGACAGAGAGGAACGAGATGGCTTGGGAGGCGAGGGTGGAGCAGTACCTTAGCCAGTGGGAGAGCAGATTGGACCATGTTGTG GCAAGTGCGGTTTTCGAAGATCCAGAGAGGGTTGTGCCTCGTGCATTTGTGGTGTGCGACGAAGAAGAAGACAGCAATTTCCAGTGGTGGAAGATTGAGA ACAACCCTCCTGATGATCACATCGCCATTCAAGGTTCTGATCATATGGTTATGTTTTCCAAACCCGCTGCCTTCTCCACTTATCTTCTCTAG
AA sequence Show only first row Show all	>Lus10005401 pacid=23145146 polypeptide=Lus10005401 locus=Lus10005401.g ID=Lus10005401.BGIv1.0 annot-version=v1.0 MTISRHFVLLHGACNGAWIWYKVSALLKEAGHNVTAIDLASSGIHPKKWQEVNSFLEYSEPLLTFMESLPSDGEKVVIVAHSLGGYSASIAMERFPEKIS LGIFVTASMLGPDLNYELMAEKYVEFAAPMMDTVFTYGNGPDKTPTVAMVGPKYMEAVNYRKSPRAVGHPFVDSNTIEDLELGLTLVRPTPVFDQEQAAI DTRVTKEKYGTIPRVFVLCDAEYKGAFQWWQVKNNPPDEHILIEESDHMVMLSQPGPLVDYLLKDEVMFLLGLTERNEMAWEARVEQYLSQWESRLDHVV ASAVFEDPERVVPRAFVVCDEEEDSNFQWWKIENNPPDDHIAIQGSDHMVMFSKPAAFSTYLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10005401 [exp]	0	1
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10006191 [exp]	10.0	0.8171
AT4G21445			unknown protein		Lus10002594 [exp]	15.7	0.8597
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10014298 [exp]	16.3	0.8516
AT3G15190			chloroplast 30S ribosomal prot...		Lus10005538 [exp]	20.1	0.8588
AT2G20830			transferases;folic acid bindin...		Lus10039789 [exp]	21.2	0.8141
AT1G77122			Uncharacterised protein family...		Lus10018923 [exp]	23.2	0.7987
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	30.4	0.8469
AT1G33330			Class I peptide chain release ...		Lus10032675 [exp]	32.6	0.7668
AT4G24750			Rhodanese/Cell cycle control p...		Lus10019454 [exp]	39.0	0.8392
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Lus10039589 [exp]	41.2	0.8428

Compare expression of checked genes

Lus10005401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.