Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23620 205 / 3e-65 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23580 204 / 4e-65 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT2G23600 202 / 2e-64 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT3G50440 201 / 3e-63 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23610 194 / 5e-61 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT2G23550 192 / 4e-60 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT2G23560 188 / 6e-59 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT4G37150 187 / 2e-58 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT2G23590 187 / 3e-58 ATMES8 methyl esterase 8 (.1) AT5G10300 169 / 3e-51 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009203 [exp] 543 / 0 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10005400 [exp] 407 / 6e-145 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10009205 [exp] 387 / 6e-137 AT2G23580 194 / 3e-61 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005401 [exp] 370 / 1e-128 AT2G23600 184 / 5e-56 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10015532 [exp] 254 / 1e-84 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 238 / 2e-78 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10023326 [exp] 204 / 7e-65 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10038592 [exp] 180 / 2e-55 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10003511 [exp] 154 / 1e-44 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036800 [exp] 297 / 2e-100 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.007G036700 [exp] 281 / 2e-95 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.009G107500 [exp] 246 / 4e-81 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107200 [exp] 242 / 1e-79 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G037700 [exp] 207 / 7e-66 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037300 [exp] 201 / 2e-63 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133700 [exp] 194 / 3e-61 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 192 / 2e-60 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133600 [exp] 190 / 1e-59 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.011G082400 [exp] 176 / 2e-54 AT2G23590 254 / 4e-85 methyl esterase 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005402 pacid=23145145 polypeptide=Lus10005402 locus=Lus10005402.g ID=Lus10005402.BGIv1.0 annot-version=v1.0 ATGCCGCCGGAAAGAAATATAATAAAGAGCCATTTCGTGTTGGTTCACGGAGCGTGTCATGGAGCGTGGTGCTGGTACAAAGTTGGTGCCCTCATGAAAG ATGCTGGCCATAAGGTCACCGCAATAGACCTGGCTGCTTCTGGGATGCATCCGAAGAAAGTGGAAGATGTTCGTTCTATTGTCGACTACTCGGAGCCGTT GCTTACTTTCTTGGATTCTCTTCCTAGTGATGATGAAGACGACAAGGTTATTGTTGTAGCTCACAGTCTCGGCGGTTATAGTTTGTGCATTGCCATGGAG AGGTTCCCTCAGAAGATCTCCCTTGGAGTCTTTGTCATTGCCAGCATGCTGGGTCCTGATCTTACATACAAACTTGTTGCCCAAAAGTACGCTGAGCTAG CGGCGGACTACATGGACACTCAACTTATATTTGGGAACGGGCCAGACAAATTTCCAACCGCTGCGTTGCTTGGGCCCAAGTATATGGAGACAACCTCTTA TCGCAATTCTCCTCACCAAGATTTGCAATTGGGATTAAAACTGATAAGACCAAGTCCTATATTTGATCCAGAAGAAGCTGCAAAAGACACGATTGTGACA AGAGAGAAATACGGTATAGTCCCTCGGGCATTTGTGGTATGCGATGAAGAACAATCTGGGACATTACAGTGGTGGCAAATTGAGAACAATCCTCCCAATG AATATGTTGTCATTGAAGGCTCTGATCACATGGTCATGTTCTCCAAACCTGGCCCCCTCACGGATTATCTCCTCAAACTTGGAGTCAAATACCACCACAC CAATATTGATCAGCTACAGCGTTTGACCCAAAATGCCTAA
AA sequence Show only first row Show all	>Lus10005402 pacid=23145145 polypeptide=Lus10005402 locus=Lus10005402.g ID=Lus10005402.BGIv1.0 annot-version=v1.0 MPPERNIIKSHFVLVHGACHGAWCWYKVGALMKDAGHKVTAIDLAASGMHPKKVEDVRSIVDYSEPLLTFLDSLPSDDEDDKVIVVAHSLGGYSLCIAME RFPQKISLGVFVIASMLGPDLTYKLVAQKYAELAADYMDTQLIFGNGPDKFPTAALLGPKYMETTSYRNSPHQDLQLGLKLIRPSPIFDPEEAAKDTIVT REKYGIVPRAFVVCDEEQSGTLQWWQIENNPPNEYVVIEGSDHMVMFSKPGPLTDYLLKLGVKYHHTNIDQLQRLTQNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23580		ATMES4, ABE4	ARABIDOPSIS THALIANA METHYL ES...		Lus10005402 [exp]	0	1
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10007429 [exp]	2.0	0.9610
AT3G47070			unknown protein		Lus10001204 [exp]	3.5	0.9610
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10010671 [exp]	4.2	0.9581
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10021662 [exp]	4.9	0.9526
AT1G51400			Photosystem II 5 kD protein (....		Lus10014908 [exp]	6.0	0.9515
AT3G21055		PSBTN	photosystem II subunit T (.1)		Lus10027359 [exp]	6.3	0.9517
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10023128 [exp]	6.3	0.9436
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10014115 [exp]	7.4	0.9367
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10012459 [exp]	8.4	0.9476
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10001645 [exp]	9.8	0.9458

Compare expression of checked genes

Lus10005402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.