Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53890 1153 / 0 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT2G02220 830 / 0 ATPSKR1 phytosulfokin receptor 1 (.1) AT1G72300 759 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 463 / 8e-145 BRL1 BRI1 like (.1.2) AT3G13380 452 / 2e-140 BRL3 BRI1-like 3 (.1) AT5G07280 441 / 4e-136 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G39400 439 / 2e-135 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT2G01950 431 / 8e-133 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT4G20140 428 / 6e-131 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 417 / 9e-127 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009213 [exp] 1868 / 0 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10019722 [exp] 770 / 0 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10016395 [exp] 762 / 0 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 456 / 6e-142 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 446 / 6e-138 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 432 / 6e-133 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 423 / 1e-129 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 420 / 1e-128 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 417 / 2e-127 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G116900 [exp] 1362 / 0 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.001G398500 [exp] 1342 / 0 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.008G144700 [exp] 830 / 0 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.010G097700 [exp] 827 / 0 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.003G074000 [exp] 770 / 0 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G161000 [exp] 753 / 0 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G141200 [exp] 468 / 1e-145 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 464 / 6e-144 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.007G078100 [exp] 453 / 8e-141 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G140500 [exp] 450 / 4e-140 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005403 pacid=23145143 polypeptide=Lus10005403 locus=Lus10005403.g ID=Lus10005403.BGIv1.0 annot-version=v1.0 ATGGTGAAGTTGGGGTTTCTGATTAGTTCACTCAAATGGCTAGTCTTGCTTTGCTTTCTTTCATCCTCTCTTGGTTATATTCATGCAATCAATGGCCAAT TATCCTGTAATCCCAATGACTTAAAGGCACTCAAGGAATTTGCTGGCGGCTTCAATAATGGATCACTGGTTGCTTCTTGGTCTGATGATACCAAGTGCTG CAACTGGGATGGAGTTTCTTGTGGAGATTACATCATCTCAGATGGCAGTAGAGTGACTATGCTGATTCTACAAAAGCATGGCCTTCAAGGGCCGATTCCT AAAGTTTTGGGCAGCTTGGATCAGCTCAAATCGCTCGATCTCTCCTTCAATCGTCTTGATGGCGAGCTGCCCTTGGAGCTCTCGGGGCTAAAGAAGCTGG AGGTTCTTGATTTAAGTCATAACATGCTCTCAGGAAATGTTTCAGATGTGCTCTCTGGTATGCTATCAATTCAATCGTTCAACATTTCCAGCAATCATTT CGACGATGACTTGTTTCAGCTTGTCGAACTTCCGACTCTTGTTGTATTCAACATAAGCAACAATTCTTTCAGTGGCCCTTTGAGTCCCAGAATTTGCAGC TTATCTAGTGGGATTGAAATTGTTGATCTGTCAATGAACAATGTTGTTGGTAGTCTGGAGAAGTTGACAAATTGCAGCTCATCACTCCAGCAGCTGCATT TAGACGGCAATATGATCTCGGGTACTCTTCCTCCGACTTTGTATTCATTGCCGGCTTTGCAACAACTATCTATTTCCAGCAACAATTTCTCTGGCCACTT AAGTGAAGAATTGAGTAAGCTCTCCAGCCTTACTACCTTCCTTGTTTATGGGAACAGGTTTTCAGGTCAGATTCCCGATGTTTTTGACAACCTTGCTGAG TTAGAGCAATTTGATGGTCACTCCAATTCATTCTCTGGACCATTGCCTTCAACCCTGTCATTATGCAGCAAGCTCCGCGTCCTTGACCTTAGAAATAATA CCATGTCTGGCCCAATTGATCTCAACTTTTCTTCAATGCCTCATCTTAATATACTTGATCTAGCCACCAATCGCTTCTTTGGCTCGCTTCCAGAGTCTCT CTCTGATTGCCATGAATTGAAGACTTTGAGCCTAGCTAAGAATGTCTTGAATGGCAGTATACCTGAGAGTTATGGCATGCTCTCATCGCTTTCATTTCTC TCCTTGTCAAACAACACGGTTGTGAACTTGCATAGTGCATTATCTGTGCTGCAACATTGTCAGAATCTCACCACTCTAATCCTCACAAAGAATTTTATTG GTGATGAGATACCTGTAAATGTGAGTGGATTTGAGAGTTTGGCCGTCTTTGCACTTGGAAATTGTGCTCTCAGAGGCCAAATCCCTCAATGGTTACTGAA TTGCAAGAAGTTACAGGTTCTTGACTTGTCATGGAATCGTCTTGATGGTGGTATTCCTACTTGGATTGGTCAGATGGAGAATTTATTTTACTTGGATATT TCAAATAACTCTCTTACTGGAGAAATACCAGAAAGCCTTATGGAGCTAAAGAGTCTCACTTCTGCCAGCCCAAGTGCACCTAGTCTCATTTCTTCAGCGG GGATTCCACTATACGTGAAGAGGAACCGGAGTGGAAGTGGCTTGCAGTACAAACAGGTATCAAGCTTCCCACCATCCATGTATTTGAGCTTCAACAAGAT AAATGGGACACTTTTGCCAAAGATCGGACAGTTAAAACAACTTCATGTGTTAGATTTGAGCAACAACAACATTACTGGTGCTATACCTAGTTCCATAGCA GACTTGGTGAATTTGGAAGTGCTAGACCTGTCATCAAATGATCTCTTTGGGTCAATCCCTCCTACACTTGAACGGCTCACATTCCTTTCAAGATTCAGTG TCGCTGATAACCACTTGAAAGGGAAAATTCCAACTGGAGGTCAGTTCTCTAGCTTTTCCAACTCAAGCTTTGACGGCAATCTGGGACTTTGTGGGGGAGT AGTTTCTCCTTGCGGAGATGTTGAGACTATGTGGACTCCTGGTATACCATCTGGTTCAAAGGGTAAATTTGGTCGAGCCAATATTGTTGGTATAACGGTG GCTGTTGGAGTTGGATTGGCATTGATCCTTGCAATTATTGTGGTTATGATGTCAAGAAGAGCCAGGGGAGATCTTATCAACAGCCTGGATGAGGAAGCGA GCGAGTCACAGAGGTCATCTCAAGCACTTATGACATCCAAGTTGGTGCTTTTTCAAAATTCAGACTGCAAGGGTCTTACGGTTACTGACTTGTTGAAAGC TACTAATAATTTTAGTCAAGCAAACATCATTGGCTGCGGGGGATTTGGCCTTGTTTACAAAGCCAGCCTTCCCAATGGCAAAAAGGCTGCAATTAAGAAG CTTTCTGGAGATTGCGGGCAGATTGATCGTGAATTTCAAGCCGAAGTTGAAGCACTCTCAAGGGCTCAGCATAAAAATCTTGTTTCCCTTCAAGGTTATT GTAAGCATGGGAGTGACAGGCTATTGGTGTACTCATACATGGAGAATGGAAGCTTGGACTATTGGTTGCATGAGTGTGTTGATGGGCCTTCAGTTCTTCA ATGGGAAGCCAGGCTCAAGATTGCTAAAGGTGCAGCAAAGGGGTTAGCTTACCTTCACAAAGTATGCGAGCCGCATATTGTTCACCGAGATGTTAAGTCT AGTAACATACTTTTGGACGACAAATTTGAGGCTCATTTGGCCGATTTTGGTCTTTCAAGGCTATTACGGCCGTATGATACTCATGTGACGACGGATTTGG TTGGGACCTTGGGTTATATTCCTCCTGAATATAGTCAAGCCCTGACGGCAACTTGCAGGGGTGATGTTTACAGTTTTGGGGTTGTTCTTCTTGAGCTTCT CACATGTAGAAGGCCTGTAGAGGTATGCAAGGGGAAAAGTTGTAGGGACTTGGTGTCCTGGGTATTCCAGATGAAGTTTGAGAAAAGGGTGTCTGAGATT ATAGACGCTTCGATCTGGGACAAAGATCAGGAAAAGCAGCTAGTCGAAATGCTTGAAATAGCTTGCCGGTGCTTGGATCATGAACCTAGAAGGAGACCCT TCATCGAAGAAGTGGTTTCCTGCCTTGATGGTATTGGAGACACTTGA
AA sequence Show only first row Show all	>Lus10005403 pacid=23145143 polypeptide=Lus10005403 locus=Lus10005403.g ID=Lus10005403.BGIv1.0 annot-version=v1.0 MVKLGFLISSLKWLVLLCFLSSSLGYIHAINGQLSCNPNDLKALKEFAGGFNNGSLVASWSDDTKCCNWDGVSCGDYIISDGSRVTMLILQKHGLQGPIP KVLGSLDQLKSLDLSFNRLDGELPLELSGLKKLEVLDLSHNMLSGNVSDVLSGMLSIQSFNISSNHFDDDLFQLVELPTLVVFNISNNSFSGPLSPRICS LSSGIEIVDLSMNNVVGSLEKLTNCSSSLQQLHLDGNMISGTLPPTLYSLPALQQLSISSNNFSGHLSEELSKLSSLTTFLVYGNRFSGQIPDVFDNLAE LEQFDGHSNSFSGPLPSTLSLCSKLRVLDLRNNTMSGPIDLNFSSMPHLNILDLATNRFFGSLPESLSDCHELKTLSLAKNVLNGSIPESYGMLSSLSFL SLSNNTVVNLHSALSVLQHCQNLTTLILTKNFIGDEIPVNVSGFESLAVFALGNCALRGQIPQWLLNCKKLQVLDLSWNRLDGGIPTWIGQMENLFYLDI SNNSLTGEIPESLMELKSLTSASPSAPSLISSAGIPLYVKRNRSGSGLQYKQVSSFPPSMYLSFNKINGTLLPKIGQLKQLHVLDLSNNNITGAIPSSIA DLVNLEVLDLSSNDLFGSIPPTLERLTFLSRFSVADNHLKGKIPTGGQFSSFSNSSFDGNLGLCGGVVSPCGDVETMWTPGIPSGSKGKFGRANIVGITV AVGVGLALILAIIVVMMSRRARGDLINSLDEEASESQRSSQALMTSKLVLFQNSDCKGLTVTDLLKATNNFSQANIIGCGGFGLVYKASLPNGKKAAIKK LSGDCGQIDREFQAEVEALSRAQHKNLVSLQGYCKHGSDRLLVYSYMENGSLDYWLHECVDGPSVLQWEARLKIAKGAAKGLAYLHKVCEPHIVHRDVKS SNILLDDKFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQALTATCRGDVYSFGVVLLELLTCRRPVEVCKGKSCRDLVSWVFQMKFEKRVSEI IDASIWDKDQEKQLVEMLEIACRCLDHEPRRRPFIEEVVSCLDGIGDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10005403 [exp]	0	1
AT5G15240			Transmembrane amino acid trans...		Lus10030469 [exp]	2.4	0.7910
AT5G15240			Transmembrane amino acid trans...		Lus10012824 [exp]	4.2	0.7799
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10039609 [exp]	6.9	0.7535
AT1G06980			unknown protein		Lus10038171 [exp]	11.7	0.7347
AT4G18950			Integrin-linked protein kinase...		Lus10002765 [exp]	17.9	0.6738
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10001686 [exp]	25.5	0.7161
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10016928 [exp]	26.0	0.6868
					Lus10000348 [exp]	26.3	0.7091
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	31.5	0.7066
AT1G27750			nucleic acid binding (.1)		Lus10007756 [exp]	33.5	0.6803

Compare expression of checked genes

Lus10005403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.