Plant FIBer expression Database

Lus10005404 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15280 45 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009211
[exp]
168 / 5e-54 AT3G15280 67 / 2e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G398300
[exp]
57 / 1e-10 AT3G15280 51 / 2e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10005404 pacid=23145147 polypeptide=Lus10005404 locus=Lus10005404.g ID=Lus10005404.BGIv1.0 annot-version=v1.0
ATGGCAGCAATATTTCTTGCAAGGGGATCAGCAGCAGCCACCATTAACATCCCCAAATCTTCCGCCGTCTTTGTTGATTCCACCTCCAGGTTCTCTATCG
CCTTTCAACGAGACGAGGGGAGAAATTCGGCGGCGGTGTCAGAAGGGGCGGCTGCTTTCATGGCGGATACTGTGAAACAGGGGGTTGAGAAAGCCAAAGA
GGTAGCTGATGCAATGGTGGGTGGTGCAAAGAAGACGGTGGAGCGAAGGTGGGCAGCGGCTAAGGATGTGAATCAGGGGGTGAGGAAAACAGTGGTAGCT
GGCGGCAGCGGAGGACGAGATCATGAGGGAGAAGTTGGGGTTGGTGAAGAAGAAGGGGAGACGGTGGTGGACGAGGTGGTGGAGGAGATTAAAGATATAG
ATGGGCCTGTGGATATGGCTGAATATAGAGCGATAAAACAGAGCTTGGAGGACTTGAACAACAAAGTCGATTAA
AA sequence
>Lus10005404 pacid=23145147 polypeptide=Lus10005404 locus=Lus10005404.g ID=Lus10005404.BGIv1.0 annot-version=v1.0
MAAIFLARGSAAATINIPKSSAVFVDSTSRFSIAFQRDEGRNSAAVSEGAAAFMADTVKQGVEKAKEVADAMVGGAKKTVERRWAAAKDVNQGVRKTVVA
GGSGGRDHEGEVGVGEEEGETVVDEVVEEIKDIDGPVDMAEYRAIKQSLEDLNNKVD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15280 unknown protein Lus10005404
[exp]
0 1
AT5G26650 MADS AGL36 AGAMOUS-like 36 (.1) Lus10016180
[exp]
2.4 0.8652
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Lus10029182
[exp]
3.2 0.8291
AT4G23160 CRK8 cysteine-rich RLK (RECEPTOR-li... Lus10031579
[exp]
4.5 0.8362
Lus10019810
[exp]
4.5 0.8874
AT2G29040 Exostosin family protein (.1) Lus10003440
[exp]
5.5 0.8451
AT1G07175 unknown protein Lus10018252
[exp]
6.0 0.8012
AT3G19920 unknown protein Lus10010180
[exp]
6.0 0.8080
AT5G24090 ATCHIA chitinase A (.1) Lus10037984
[exp]
6.2 0.7369
AT1G69480 EXS (ERD1/XPR1/SYG1) family pr... Lus10004285
[exp]
11.2 0.7886
AT5G02930 F-box/RNI-like superfamily pro... Lus10040452
[exp]
11.5 0.8146

Lus10005404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.