Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15260 369 / 1e-129 Protein phosphatase 2C family protein (.1.2) AT4G28400 318 / 1e-109 Protein phosphatase 2C family protein (.1) AT2G20630 311 / 6e-107 PIA1 PP2C induced by AVRRPM1 (.1.2) AT1G34750 281 / 3e-95 Protein phosphatase 2C family protein (.1) AT1G22280 273 / 7e-92 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT1G78200 238 / 4e-78 Protein phosphatase 2C family protein (.1.2) AT2G34740 237 / 5e-77 Protein phosphatase 2C family protein (.1.2) AT5G10740 167 / 8e-50 Protein phosphatase 2C family protein (.1) AT1G43900 165 / 1e-48 Protein phosphatase 2C family protein (.1) AT5G24940 166 / 2e-48 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009210 [exp] 312 / 3e-106 AT3G15260 300 / 4e-101 Protein phosphatase 2C family protein (.1.2) Lus10039853 [exp] 303 / 1e-103 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 303 / 1e-103 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 290 / 2e-98 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1) Lus10008556 [exp] 272 / 4e-91 AT4G28400 352 / 1e-122 Protein phosphatase 2C family protein (.1) Lus10028094 [exp] 266 / 7e-89 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1) Lus10040565 [exp] 265 / 2e-88 AT4G28400 359 / 1e-125 Protein phosphatase 2C family protein (.1) Lus10033453 [exp] 251 / 1e-83 AT1G34750 369 / 7e-130 Protein phosphatase 2C family protein (.1) Lus10038455 [exp] 243 / 5e-80 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G398100 [exp] 390 / 7e-138 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2) Potri.011G116700 [exp] 380 / 3e-134 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.017G013300 [exp] 333 / 2e-115 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 289 / 4e-98 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 288 / 5e-98 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 264 / 3e-88 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.018G150800 [exp] 264 / 4e-88 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.018G013900 [exp] 162 / 2e-48 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G267600 [exp] 162 / 2e-48 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 155 / 1e-45 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10005405 pacid=23145142 polypeptide=Lus10005405 locus=Lus10005405.g ID=Lus10005405.BGIv1.0 annot-version=v1.0 ATGTCCGACAAGGAAATCATCAACAAAATGAAGGAAAAAGTGGGACTCGGATCGTCGGCGGACTCAATGAAGGGTAAAAGCAGAGTGGACAAACACGTGA GCCATGCCTACCATCTTGTCAAAGGCAGATCCAATCACCCCATGGAAGATTACTTCGTTTCCGAATTCCGCACCGTCCATGGCAACGACCTCGGATTGTT CGCTATCTTTGACGGCCATCTCAGTCAAAGCGTCCCCGATTATCTCAGCTCCAATCTCTTCGACAACATCTTGAAAGAGGAGAATTTTTGGACGGAACCA GAGAAGGCGATTACACGAGCATACAAGGAGACCGACAGCGACATATTGGATAATGCAGGGGATTTGGGAAGAGGGGGTTCCATGGCGGTTAACTGCCAAA AGTTGGTAGTGGCCAACGTTGGGGATTCTCGTGCTGTGATCTCCAAGAAGGGTGTTGCCAAGCATTTGTCCATAGATCATGAGCCTGAAATGGAGAGGTC GGAAATCGAGAACAGAGGTGAATTTGTCACAAACTTCCCAGTAGATGTAGCGAGAGTAGATGGTCAACTGACAGTGTCGAGAGCATTTGGGGACAAGAGC TTGAAGAAGCATCTCAGTTCTGATCCTTACGTTGTTGTGGAGGAAATTGATGATGACACTGATTGTGTTATCTTAGCCAGCGATGGTTTATGGAAGGTAA TGTCGAACCAAGAAGCGGTAGATGCTATCAAGGATGTAAAGGATGCTCGTACCGCGACGAAGGGACTTACAGAAGAGGCGGTCTTTTTTCCATTTTGTGA TTATGTGAAGAACTGA
AA sequence Show only first row Show all	>Lus10005405 pacid=23145142 polypeptide=Lus10005405 locus=Lus10005405.g ID=Lus10005405.BGIv1.0 annot-version=v1.0 MSDKEIINKMKEKVGLGSSADSMKGKSRVDKHVSHAYHLVKGRSNHPMEDYFVSEFRTVHGNDLGLFAIFDGHLSQSVPDYLSSNLFDNILKEENFWTEP EKAITRAYKETDSDILDNAGDLGRGGSMAVNCQKLVVANVGDSRAVISKKGVAKHLSIDHEPEMERSEIENRGEFVTNFPVDVARVDGQLTVSRAFGDKS LKKHLSSDPYVVVEEIDDDTDCVILASDGLWKVMSNQEAVDAIKDVKDARTATKGLTEEAVFFPFCDYVKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15260			Protein phosphatase 2C family ...		Lus10005405 [exp]	0	1
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10020828 [exp]	2.0	0.9707
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	2.2	0.9806
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	5.5	0.9747
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	6.0	0.9747
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005594 [exp]	7.7	0.9488
					Lus10017917 [exp]	8.7	0.9705
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	11.8	0.9656
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	12.4	0.9688
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	13.2	0.9689
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10028311 [exp]	14.1	0.9630

Compare expression of checked genes

Lus10005405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.