Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26594 111 / 2e-32 ARR24 response regulator 24 (.1) AT3G04280 63 / 3e-13 ARR22 response regulator 22 (.1.2.3) AT5G10720 50 / 9e-08 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G47430 47 / 8e-07 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT5G35750 45 / 4e-06 AHK2 histidine kinase 2 (.1) AT2G01830 41 / 0.0001 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT3G04580 41 / 0.0001 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028021 [exp] 88 / 4e-23 AT5G26594 99 / 3e-27 response regulator 24 (.1) Lus10004775 [exp] 77 / 4e-19 AT5G26594 98 / 2e-27 response regulator 24 (.1) Lus10003726 [exp] 53 / 1e-09 AT5G26594 49 / 3e-08 response regulator 24 (.1) Lus10029849 [exp] 53 / 1e-08 AT2G47430 489 / 2e-153 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10026917 [exp] 50 / 7e-08 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10006370 [exp] 50 / 8e-08 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10012325 [exp] 50 / 1e-07 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10013250 [exp] 49 / 3e-07 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10030772 [exp] 49 / 3e-07 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G253000 [exp] 107 / 8e-31 AT5G26594 171 / 5e-56 response regulator 24 (.1) Potri.009G108000 [exp] 99 / 1e-27 AT5G26594 163 / 5e-53 response regulator 24 (.1) Potri.019G024900 [exp] 71 / 1e-16 AT5G26594 121 / 2e-36 response regulator 24 (.1) Potri.019G025000 [exp] 62 / 7e-13 AT5G26594 117 / 2e-34 response regulator 24 (.1) Potri.001G050900 [exp] 58 / 1e-10 AT3G04280 83 / 4e-19 response regulator 22 (.1.2.3) Potri.003G177300 [exp] 55 / 1e-09 AT3G04280 96 / 8e-25 response regulator 22 (.1.2.3) Potri.003G177400 [exp] 54 / 2e-09 AT3G04280 99 / 9e-26 response regulator 22 (.1.2.3) Potri.006G270500 [exp] 53 / 7e-09 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.001G055600 [exp] 52 / 7e-09 AT5G26594 72 / 7e-16 response regulator 24 (.1) Potri.018G011400 [exp] 53 / 9e-09 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10005407 pacid=23145141 polypeptide=Lus10005407 locus=Lus10005407.g ID=Lus10005407.BGIv1.0 annot-version=v1.0 ATGAGTAACAACAGTATCAGCAGTAGCAGTGAGAAGAAGAAGATTATAAGAGCACTGGTTGTGGATGACAACAGCATGAATAGAATGATTCACCAGAAGA TGCTGGAGAAGCTTGGGATGATAGACAAGTTAGAGGTTGCCTGCAATGGGAAGGAAGCAATAGAGATGGTTGCAGCTGTGGGTCTCAACTACTTCCACCT CATTCTTATGGATATGGACATGCCTGTTATGAACGGCATCCAGGCAACGAAGAAACTACGTGGAATGGGGATAGGAAGCATGATAATGGGAGTATCTTCG CGTTCAATGGAAGGAGACATCACAGAATTTATAGAGGCTGGACTTGATGATTACCATCAGAAACCTTTGACCACTACTAAGCTCCTCTCTGTCCTCAACA CCCTCAGTCGTCCTTCTTCTTAA
AA sequence Show only first row Show all	>Lus10005407 pacid=23145141 polypeptide=Lus10005407 locus=Lus10005407.g ID=Lus10005407.BGIv1.0 annot-version=v1.0 MSNNSISSSSEKKKIIRALVVDDNSMNRMIHQKMLEKLGMIDKLEVACNGKEAIEMVAAVGLNYFHLILMDMDMPVMNGIQATKKLRGMGIGSMIMGVSS RSMEGDITEFIEAGLDDYHQKPLTTTKLLSVLNTLSRPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26594		ARR24	response regulator 24 (.1)		Lus10005407 [exp]	0	1
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	2.0	0.9580
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	2.8	0.9567
					Lus10017557 [exp]	3.0	0.9546
					Lus10013898 [exp]	4.7	0.9214
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	6.7	0.9338
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10022796 [exp]	9.6	0.8445
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	9.8	0.9472
					Lus10002746 [exp]	10.2	0.8322
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10013670 [exp]	10.2	0.9254
					Lus10027664 [exp]	11.0	0.9270

Compare expression of checked genes

Lus10005407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.