Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19630 569 / 0 Radical SAM superfamily protein (.1) AT1G60230 182 / 4e-53 Radical SAM superfamily protein (.1) AT2G39670 177 / 3e-51 Radical SAM superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020989 [exp] 755 / 0 AT3G19630 569 / 0.0 Radical SAM superfamily protein (.1) Lus10002698 [exp] 192 / 3e-57 AT2G39670 595 / 0.0 Radical SAM superfamily protein (.1.2) Lus10000953 [exp] 192 / 6e-55 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10013005 [exp] 150 / 3e-41 AT1G60230 582 / 0.0 Radical SAM superfamily protein (.1) Lus10029159 [exp] 105 / 6e-25 AT1G60230 468 / 2e-163 Radical SAM superfamily protein (.1) Lus10000081 [exp] 88 / 4e-20 AT1G60230 332 / 9e-114 Radical SAM superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G294900 [exp] 620 / 0 AT3G19630 577 / 0.0 Radical SAM superfamily protein (.1) Potri.010G040700 [exp] 186 / 1e-54 AT1G60230 583 / 0.0 Radical SAM superfamily protein (.1) Potri.008G056500 [exp] 184 / 3e-54 AT2G39670 622 / 0.0 Radical SAM superfamily protein (.1.2) Potri.010G203300 [exp] 69 / 1e-12 AT2G39670 238 / 2e-75 Radical SAM superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily
Representative CDS sequence Show only first row Show all	>Lus10005409 pacid=23182221 polypeptide=Lus10005409 locus=Lus10005409.g ID=Lus10005409.BGIv1.0 annot-version=v1.0 ATGACTTTCCGATCAATCTTCGACGCGCCAGACCTCCGGAACGAGTTTGAGAAAGCAGGGGTCAGCCTTAACTTCATCCCAATAGTTTGGAAGCACGTGG TTAAGAACCCTAACTGTGAATGGGATGATATACCGAGTCTTCCTTCTGCTGCATACTCGGTTCTCCATTCAAATTTCAGACCTTTAACTTCTTCCGTTCA GTCTGTAATGGATTCAAGTGATGGGGTTACTACCAAACTCCTCATTAAGCTTCAGAATGGGGCATCTGTGGAGGCAGTTATTATGAGGTATGACAGTAGT CTGGGAAAATATAATGGAAAGACTCGCTCAGGTGGCCTGAGATCAACACTCTGCGTTTCTTCCCAGGTTGGTTGTAAAATGGGTTGCACGTTTTGTGCAA CCGGAAGCATGGGATTCAAGAACAATTTATCATCAGGAGAAATTGTTGAACAATTGGTTCATGCCTCTTGCTTGTCAGATATACGGAATATTGTCTTCAT GGGGATGGGTGAACCCTTGAACAACTATACTATGTTGGTAGAAGCTGTACGTGCTATGTTAGGGCCTCCGTTTCGGCTGTCACCAAAGAAAATAACTGTA TCAACGGTTGGGATTGTCCATGCAATCAACAAGCTGCATAAGGATTTGCCTGGTTTGAACTTGGCAGTATCACTTCACGCTCCTGTTCAGGAAATCCGAT GTAAGATAATGCCCGCAGCTCGGGCCTTTCCATTGGCAAAACTAATGGCAGCTTTGCTAGCATATCAAAAGGAAAGTCAGCAGAAAATATTTATCGAGTA CATAATGCTTGATGGGGTAAATGACCAAGAGCAGCATGCTCATGAGCTGGGGAAATTGCTGGAGACATTTGAAGTGGTTGTGAACTTGATACCTTTCAAT CCCATTGGAAGTTCAAGCCAATTCAGAACCAGCAATGAAGAGAAAGTGTCGAAATTCCAGAAAATTGTGAGAGGTGTGTATGGCATCAGAACGACAGTAC GCAAGGAAATGGGTCAGGATATAAGTGGGGCTTGTGGGCAGCTAGTAGTGAATATGCCTGATAAGAACAAGTCTGCGGTATCTCTGTTGACAGACATCGA AGATCTCCGGCTTTGA
AA sequence Show only first row Show all	>Lus10005409 pacid=23182221 polypeptide=Lus10005409 locus=Lus10005409.g ID=Lus10005409.BGIv1.0 annot-version=v1.0 MTFRSIFDAPDLRNEFEKAGVSLNFIPIVWKHVVKNPNCEWDDIPSLPSAAYSVLHSNFRPLTSSVQSVMDSSDGVTTKLLIKLQNGASVEAVIMRYDSS LGKYNGKTRSGGLRSTLCVSSQVGCKMGCTFCATGSMGFKNNLSSGEIVEQLVHASCLSDIRNIVFMGMGEPLNNYTMLVEAVRAMLGPPFRLSPKKITV STVGIVHAINKLHKDLPGLNLAVSLHAPVQEIRCKIMPAARAFPLAKLMAALLAYQKESQQKIFIEYIMLDGVNDQEQHAHELGKLLETFEVVVNLIPFN PIGSSSQFRTSNEEKVSKFQKIVRGVYGIRTTVRKEMGQDISGACGQLVVNMPDKNKSAVSLLTDIEDLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19630			Radical SAM superfamily protei...		Lus10005409 [exp]	0	1
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10035503 [exp]	8.4	0.7814
AT1G12650			unknown protein		Lus10017837 [exp]	9.3	0.7838
AT5G10110			unknown protein		Lus10022498 [exp]	12.6	0.7721
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10030524 [exp]	24.0	0.7590
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	29.7	0.7684
AT3G10530			Transducin/WD40 repeat-like su...		Lus10037324 [exp]	31.1	0.7561
					Lus10028086 [exp]	35.1	0.7476
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Lus10029795 [exp]	36.8	0.7159
AT4G08310			unknown protein		Lus10028028 [exp]	39.8	0.7243
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10024689 [exp]	44.4	0.7217

Compare expression of checked genes

Lus10005409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.