Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18040 316 / 4e-110 LSP1, CUM1, AT.EIF4E1, EIF4E eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) AT1G29550 280 / 8e-96 Eukaryotic initiation factor 4E protein (.1) AT1G29590 277 / 5e-94 eIF4E3 eukaryotic translation Initiation Factor 4E3, Eukaryotic initiation factor 4E protein (.1.2) AT5G35620 183 / 2e-58 eIFiso4E, EIF(ISO)4E, EIF(ISO)4E, EIF4E2, EIF(ISO)4E, LSP1, LSP, EIF(ISO)4E, EIF(ISO)4E, EIF(ISO)4E LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) AT5G18110 108 / 9e-29 NCBP novel cap-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015247 [exp] 424 / 5e-153 AT4G18040 322 / 1e-112 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10011988 [exp] 330 / 4e-116 AT4G18040 315 / 4e-110 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10002785 [exp] 326 / 4e-114 AT4G18040 313 / 7e-109 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10015251 [exp] 304 / 4e-106 AT4G18040 241 / 3e-81 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10011776 [exp] 212 / 2e-69 AT5G35620 263 / 4e-90 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Lus10023733 [exp] 209 / 1e-68 AT5G35620 261 / 2e-89 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Lus10020282 [exp] 112 / 3e-30 AT5G18110 347 / 1e-122 novel cap-binding protein (.1) Lus10005704 [exp] 106 / 5e-28 AT5G18110 345 / 6e-122 novel cap-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077200 [exp] 327 / 8e-115 AT4G18040 299 / 1e-103 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Potri.010G066700 [exp] 222 / 9e-74 AT5G35620 254 / 1e-86 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Potri.008G171100 [exp] 220 / 7e-73 AT5G35620 249 / 5e-85 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Potri.013G057000 [exp] 111 / 5e-30 AT5G18110 358 / 6e-127 novel cap-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0625 [flax] [poplar] eIF4e PF01652 [flax] [poplar] IF4E Eukaryotic initiation factor 4E
Representative CDS sequence Show only first row Show all	>Lus10005410 pacid=23182256 polypeptide=Lus10005410 locus=Lus10005410.g ID=Lus10005410.BGIv1.0 annot-version=v1.0 ATGGCGGTGGAAGAATCGCAGAAACAGGTGACCACAGAAGAGGTCGTGAACGCTAACCCTAAGGCCCAATCCGACGATGATGTTCTAGAGGAAGGAGAGA TAGTCGGAGGAGGGGACGAAGAATCTACTAAGAAATCAGCCACCGTGCCTCACGAGCCGCACATGCTGGAACATCAGTGGACTTTCTGGTTCGATAATCC CTCCGCCAAGTCGAAGCAGTCCACCTGGGGCAGCTCGATGCGTTCCATCTTCACTTTCTCTACCGTGGAGGAATTCTGGAGCTTGTACAATAACATTCAT CATCCCAGCAAGCTTGCACAAGGAGCAGACTTCTATTGCTTCAAACACAAGATTGAGCCCAAGTGGGAGGACCCTATCTGTGCAAATGGAGGAAGCTGGA AGATAACCTATCCAAAAGGGAAATCTGATACACCATGGCTGTACACACTGCTAGCAATGATAGGTGAGCAGTTCGATCACGGTGATGAGATTTGCGGTGC TGTTGTCAATGTCAGAGCTAGGCAGGAGAGGGTTTCTATTTGGACCAAGAACGCTGCGAACGAAGCTGCTCAGCTGAGTATCGGGAGACAGTGGAAGGAG TTCCTCGATAACAACGACAGTATCGGGTTTGTCACTCACGACGATGCGAAGAAGAATGACAGAAATGCAAAGAATCGCTATAATGCCTAA
AA sequence Show only first row Show all	>Lus10005410 pacid=23182256 polypeptide=Lus10005410 locus=Lus10005410.g ID=Lus10005410.BGIv1.0 annot-version=v1.0 MAVEESQKQVTTEEVVNANPKAQSDDDVLEEGEIVGGGDEESTKKSATVPHEPHMLEHQWTFWFDNPSAKSKQSTWGSSMRSIFTFSTVEEFWSLYNNIH HPSKLAQGADFYCFKHKIEPKWEDPICANGGSWKITYPKGKSDTPWLYTLLAMIGEQFDHGDEICGAVVNVRARQERVSIWTKNAANEAAQLSIGRQWKE FLDNNDSIGFVTHDDAKKNDRNAKNRYNA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10005410 [exp]	0	1
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10004235 [exp]	4.0	0.9176
AT1G53760			unknown protein		Lus10037462 [exp]	5.5	0.9108
AT3G26340			N-terminal nucleophile aminohy...		Lus10011369 [exp]	6.0	0.9279
AT4G24820			26S proteasome, regulatory sub...		Lus10014916 [exp]	6.3	0.9112
AT5G08450			unknown protein		Lus10019217 [exp]	8.1	0.9066
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	9.8	0.9054
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10032420 [exp]	13.2	0.9100
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10036566 [exp]	15.5	0.9115
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	17.0	0.8952
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10002794 [exp]	17.7	0.8775

Compare expression of checked genes

Lus10005410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.