Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14770 259 / 1e-87 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT1G21460 187 / 3e-59 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT5G53190 150 / 8e-45 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT5G62850 141 / 3e-41 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT4G10850 141 / 3e-41 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT1G66770 134 / 2e-38 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT4G15920 128 / 3e-36 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT5G13170 126 / 3e-35 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT3G16690 124 / 1e-34 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT5G40260 120 / 3e-33 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015245 [exp] 422 / 8e-152 AT3G14770 269 / 3e-91 Nodulin MtN3 family protein (.1) Lus10011990 [exp] 352 / 2e-124 AT3G14770 268 / 5e-91 Nodulin MtN3 family protein (.1) Lus10002783 [exp] 302 / 4e-103 AT3G14770 226 / 4e-73 Nodulin MtN3 family protein (.1) Lus10028634 [exp] 191 / 2e-60 AT1G21460 359 / 1e-126 Nodulin MtN3 family protein (.1) Lus10018932 [exp] 189 / 5e-60 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Lus10002364 [exp] 158 / 2e-47 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10034880 [exp] 156 / 4e-47 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10003200 [exp] 153 / 1e-45 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1) Lus10033416 [exp] 147 / 2e-43 AT5G62850 283 / 8e-97 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355500 [exp] 290 / 8e-100 AT3G14770 231 / 2e-76 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 257 / 7e-87 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.001G383000 [exp] 248 / 2e-83 AT3G14770 251 / 1e-84 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 190 / 2e-60 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 190 / 2e-60 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 190 / 2e-60 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 188 / 1e-59 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.003G143100 [exp] 148 / 7e-44 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 142 / 8e-42 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.001G344300 [exp] 139 / 2e-40 AT3G28007 239 / 2e-79 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10005411 pacid=23182218 polypeptide=Lus10005411 locus=Lus10005411.g ID=Lus10005411.BGIv1.0 annot-version=v1.0 ATGGCGATGTTGAACGAGCTTTCTTCTGTTTACTCTGTTTGCAGCGACGCAGCTGGAGTTGCAGTTCATTTCCTTTTTGTTTATTTCAGACCAACATTTA GAAGAATCATCAGAAACAAGTCGACAGAACAGTTCTCAGGATTGCCTTACATCTACTCTCTTTTCAACTGCTTAATCTGTTGCTGGTATGGATTGCCCTT CATCTCCCCCAACATCATATTGGTCGCCACGACGAATTCCTTTGGTGCAATCTTCCAGTTCATCTACTTGGCCATCTTCATTGCCTATACTGATAAAACC AACAAGCTCAAGATGTCGGCTTTGCTTGGCACAGTGCTGGCCATATTTGCAGCGATTGCTTATGTGAGCTTGAGATTCCTGGATTCTGAAACCAGACAGT TGTTCATTGGGTATCTCAGTGTTTTCTCTCTGATTTCCATGTTTGCTTCACCACTTTTTATCATTAATCTCGTGATCAAAAGTAGGAGCGTAGAATACAT GCCATTCTTCCTTTCGTTCGCCACCTTTTTGATGAGCCTCTCATTCTCTGCATATGGATTACTCAAGGCTGATGTTTTCATTTATGTACCAAATGGGATT GGTACCATTCTGGGAGTGGTTCAGCTGGCATTATACTACTACTACAGCAGCCAATTTGATGATGATAACACACGAGAACCTTTGCTAGCAGCATATGCAT GA
AA sequence Show only first row Show all	>Lus10005411 pacid=23182218 polypeptide=Lus10005411 locus=Lus10005411.g ID=Lus10005411.BGIv1.0 annot-version=v1.0 MAMLNELSSVYSVCSDAAGVAVHFLFVYFRPTFRRIIRNKSTEQFSGLPYIYSLFNCLICCWYGLPFISPNIILVATTNSFGAIFQFIYLAIFIAYTDKT NKLKMSALLGTVLAIFAAIAYVSLRFLDSETRQLFIGYLSVFSLISMFASPLFIINLVIKSRSVEYMPFFLSFATFLMSLSFSAYGLLKADVFIYVPNGI GTILGVVQLALYYYYSSQFDDDNTREPLLAAYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10005411 [exp]	0	1
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10002170 [exp]	1.4	0.9500
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10039886 [exp]	2.0	0.9469
AT4G02920			unknown protein		Lus10042685 [exp]	5.3	0.9153
					Lus10015426 [exp]	6.3	0.8832
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10039740 [exp]	7.7	0.9042
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10039216 [exp]	8.8	0.9125
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031299 [exp]	9.4	0.9030
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10010412 [exp]	10.2	0.9218
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031298 [exp]	11.7	0.8794
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10042720 [exp]	13.4	0.9150

Compare expression of checked genes

Lus10005411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.