Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78580 1291 / 0 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT1G16980 991 / 0 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT4G27550 956 / 0 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1) AT1G17000 903 / 0 ATTPS3 TREHALOSE -6-PHOSPHATASE SYNTHASE S3, trehalose-phosphatase/synthase 3 (.1) AT4G17770 434 / 4e-138 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G06410 419 / 4e-132 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT1G68020 419 / 5e-132 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G23870 408 / 5e-128 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G70290 393 / 2e-122 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT1G60140 391 / 1e-121 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015243 [exp] 1725 / 0 AT1G78580 1354 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10005559 [exp] 1290 / 0 AT1G78580 1507 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10013694 [exp] 1283 / 0 AT1G78580 1501 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10034585 [exp] 436 / 1e-138 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 424 / 7e-134 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10015231 [exp] 410 / 5e-129 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015509 [exp] 409 / 1e-128 AT2G18700 1168 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Lus10005425 [exp] 408 / 5e-128 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10007311 [exp] 407 / 1e-127 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064600 [exp] 1330 / 0 AT1G78580 1305 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.011G103900 [exp] 1306 / 0 AT1G78580 1538 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.001G383600 [exp] 1290 / 0 AT1G78580 1493 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.010G104500 [exp] 439 / 7e-140 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.001G139500 [exp] 436 / 7e-139 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.003G094500 [exp] 434 / 4e-138 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.008G136500 [exp] 427 / 2e-135 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.018G097700 [exp] 410 / 4e-129 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.015G074000 [exp] 407 / 9e-128 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.012G078500 [exp] 402 / 5e-126 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase CL0113 [flax] [poplar] GT-B PF00982 [flax] [poplar] Glyco_transf_20 Glycosyltransferase family 20
Representative CDS sequence Show only first row Show all	>Lus10005412 pacid=23182216 polypeptide=Lus10005412 locus=Lus10005412.g ID=Lus10005412.BGIv1.0 annot-version=v1.0 ATGCCAGGGAACAATTTCAGTCACAGTCCTACGACGCCTAGAACAAGACTAGAGAGGCTACTAAGGGAGAGGGAGCTTCGCAAATCCAGCAGAGTTCCCT TTTCCACTGATCAGGAGAATGGTGATGGTTTCTCGGAAGCGGAATTTTTTGCTCAGGATTCCATTCTGTCTAATGACGAGAGTCCTGAAGGGTCTGATGG AGGTTCAGGGCAAGAGGTGCGCCCTCGTAAACAAAGATTGCTAGTGGTTGCCAACAGATTGCCGGTGTCTGCTACTCGGAAGGATGAGGATTCATGGCAC CTTGATATCAGTGTTGGCGGCTTAGTTAGTGCACTTTTGGGTGTGAAAGAGTTTGATGCAAGATGGATTGGTTGGGCTGGTGTACATGTGCCTGATGAAA CTGGGCAGAAGGCACTAACTGAAGCATTGGCTAAAAAGAGGTGCATCCCTGTTTTTCTTGATGAAGATACCGTCCACCAGTACTACAATGGCTACTGCAA CAATGTTCTGTGGCCTCTTTTCCATTACCTGGGTCTTCCCCAAGAAGACCGGCTTTCAACGACACGTAGTTTTCAGTCTCAGTTTGATGCTTATAAGAGG GCTAATCGCATGTTTGCTGATGTTGTGAATGAACATTATGAAGAGGGCGATGTTGTTTGGTGCCACGATTACCATCTCATGTTTCTCCCCAAGTGTCTGA AGGAACACAACAGCAAAATGAAGGTTGGTTGGTTCCTCCACACGCCTTTTCCTTCGTCAGAAATACACAGGATGCTTCCGTCTCGATCTGAGTTGTTGAG ATCTGTTCTAGAAGCTGATTTGGTTGGGTTCCATACATATGATTACGCCAGGCATTTTGTGAGTGCATGTACTCGTATCTTGGGGCTAGAAGGGACACCT GAAGGAGTAGAAGATCAGGGTAGACTCACTCGGGTAGCAGCGTTCCCTATCGGGATAGATTCGGATAGATTCATCCGGGCCCTTGACCTTCCCAAAGTTA AGGAAAGTATGAGAGATTTGAAACAGAGATTTGCTGGGAGAAAGTTAATGTTAGGTGTCGATCGTCTTGATATGATCAAAGGGATACCCCAAAAGATTTT GGCATTTGAAGCTTTTCTTGAGGAGAATCCACAATGGCGCGAAAAAGTAGTTCTTCTGCAAATTGCTGTACCTACTCGGACGGATGTTCCGGAATATCAA AAGCTTACAAGCCAAGTTCATGAGATTGTTGGGCGCATTAATGGAAAATTCGGGACTCTTACTAGTGTTCCGATTCATCATCTGGATCGATCACTTGACT TTACGGCACTTGTTGCACTCTATGCTGTTACTGATGTGGCACTTGTTACATCATTACGAGATGGGATGAATCTTGTCAGCTATGAGTTCGTTGCCTGCCA AGCTGCCAAGAAAGGGGTTCTTATTTTGAGTGAGTTTGCAGGAGCAGCACAGTCACTTGGTGCTGGTGCCCTTTTGGTTAACCCCTGGAATATCTCAGAC GTGGCCAATTCAATTCGTTATGCTCTGAACATGTCAGAAGATGAAAGAGAGAAGAGATTCCACCACAACTTCATGCATGTCACGACTCACACCTCACAAG AGTGGGCGGCAACCTTCGTCAGTGAACTTAACGACACCGTGGTTGAAGCCCAACTAAGAACAAGACAAGTCCTACCTGTCCTTCCAGTCGAAGATGCAAT TGCCCACTACTCCCGTTCGAACAATCGCCTGCTTATACTGGGTTTTAATGGAAGTCTTACTGAACCGGTAGATAGTTCAGGAAGAAGGGGTGGTCAAATC CGAGAACTGGAACCTAGACTGCACCCTGAGTTGAAAGAAATTCTCAAGAAGCTCTGCGATGAGGCGAAGACCACTGTAATTGTCCTCAGCGGAAGTGACC GATCAGTGCTTGATGATAACTTCGATGAGTACAAAATGTGGTTAGCAGCGGAGAATGGAATGTTCTTACGCCTTGCCATGGGAGGAGAATGGATGACAAC CATGCCCGAAACGCTAAACATGGACTGGGTTGACAGCGTGAAGCATGTGTTCGAGTATTTTACCGAAAGAACTCCTCGATCCCATTTCGAGCTCCGCGAA ACTTCACTAGTATGGAACTACAAGTACGCAGATGTTGAGTTTGGAAGGTTACAAGCAAGGGACATGCTGCAGCATCTATGGACCGGACCAATCTCAAATG CTTCTCTTGATGTCGTCCATGGTGGCCGATCTGTTGAAGTTCGAGCCGTCGGCGTTACTAAGGGAGCAGCCATTGATCGGATTCTGGGTGAAATAGTACA TAACAAAGACATGAAGGCACCTATTGATTACGTCCTCTGCATCGGCCATTTCCTCGCCAAGGATGAAGACATATACACATTTTTCGAGCCGGTACTTCCA ATGCCGCCACAGATAACATCAAGGGCCACATCCCCGGACCCGTACGGAACCAGCAGAGCGTCGAAGCCCAAGCTGCCAGGAGGATCAAGAACACCGAAAT CGCAGGTTCATCTGATGAAGCAACGATCATTGTCGACTCTGGAGCGCAGCAACTTCGGGATCTCGAGTTGGAGACGAGACGACAATAGAGGCGGGCCATC GCCAGGTCCAGCCACCGTGGCTAGGTCGTCGTCTTCTTCTTCTTCGTCTAGGTATGAAGGGTCTTCAGTTTTGGACCTGAACGGAGACAACTACTTCTCC TGTGCTGTCTCTAAGAAGAGGTCTAATGCCAGGTATCTGCCAGCAACTTGGGTGTCTCGGGTGGGAGAGGAGACGACAATAGAGGCGGGCCATCGCCAGG TCCAGCCACCGTGGCTAGGTCGTCGTCTTCTTCTTCTTCGTCTAGGTATGAAGGGTCTTCAGTTTTGGACCTGA
AA sequence Show only first row Show all	>Lus10005412 pacid=23182216 polypeptide=Lus10005412 locus=Lus10005412.g ID=Lus10005412.BGIv1.0 annot-version=v1.0 MPGNNFSHSPTTPRTRLERLLRERELRKSSRVPFSTDQENGDGFSEAEFFAQDSILSNDESPEGSDGGSGQEVRPRKQRLLVVANRLPVSATRKDEDSWH LDISVGGLVSALLGVKEFDARWIGWAGVHVPDETGQKALTEALAKKRCIPVFLDEDTVHQYYNGYCNNVLWPLFHYLGLPQEDRLSTTRSFQSQFDAYKR ANRMFADVVNEHYEEGDVVWCHDYHLMFLPKCLKEHNSKMKVGWFLHTPFPSSEIHRMLPSRSELLRSVLEADLVGFHTYDYARHFVSACTRILGLEGTP EGVEDQGRLTRVAAFPIGIDSDRFIRALDLPKVKESMRDLKQRFAGRKLMLGVDRLDMIKGIPQKILAFEAFLEENPQWREKVVLLQIAVPTRTDVPEYQ KLTSQVHEIVGRINGKFGTLTSVPIHHLDRSLDFTALVALYAVTDVALVTSLRDGMNLVSYEFVACQAAKKGVLILSEFAGAAQSLGAGALLVNPWNISD VANSIRYALNMSEDEREKRFHHNFMHVTTHTSQEWAATFVSELNDTVVEAQLRTRQVLPVLPVEDAIAHYSRSNNRLLILGFNGSLTEPVDSSGRRGGQI RELEPRLHPELKEILKKLCDEAKTTVIVLSGSDRSVLDDNFDEYKMWLAAENGMFLRLAMGGEWMTTMPETLNMDWVDSVKHVFEYFTERTPRSHFELRE TSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASLDVVHGGRSVEVRAVGVTKGAAIDRILGEIVHNKDMKAPIDYVLCIGHFLAKDEDIYTFFEPVLP MPPQITSRATSPDPYGTSRASKPKLPGGSRTPKSQVHLMKQRSLSTLERSNFGISSWRRDDNRGGPSPGPATVARSSSSSSSSRYEGSSVLDLNGDNYFS CAVSKKRSNARYLPATWVSRVGEETTIEAGHRQVQPPWLGRRLLLLRLGMKGLQFWT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005412 [exp]	0	1
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10040353 [exp]	3.5	0.8482
AT3G07200			RING/U-box superfamily protein...		Lus10040641 [exp]	6.5	0.8109
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007283 [exp]	11.2	0.7867
AT5G44390			FAD-binding Berberine family p...		Lus10026775 [exp]	11.4	0.8516
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	12.0	0.8595
AT2G39040			Peroxidase superfamily protein...		Lus10021956 [exp]	17.3	0.8106
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	22.4	0.8578
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	25.7	0.8442
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10021626 [exp]	31.6	0.8338
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10024259 [exp]	37.8	0.6645

Compare expression of checked genes

Lus10005412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.