Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 398 / 1e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 391 / 3e-136 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 376 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29660 374 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 266 / 6e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 255 / 2e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G15720 237 / 1e-75 GLIP7 GDSL-motif lipase 7 (.1) AT2G19010 232 / 4e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 228 / 7e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 224 / 6e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002777 [exp] 462 / 2e-163 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 452 / 5e-160 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 388 / 9e-135 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 387 / 2e-134 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 370 / 1e-127 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 345 / 1e-117 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015242 [exp] 263 / 2e-86 AT5G45670 369 / 7e-128 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015842 [exp] 259 / 2e-84 AT5G45670 325 / 7e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 252 / 3e-81 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076500 [exp] 423 / 2e-148 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 418 / 1e-146 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008100 [exp] 288 / 1e-95 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 284 / 5e-94 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 283 / 1e-93 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 281 / 5e-93 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 281 / 8e-93 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 280 / 1e-92 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 280 / 2e-92 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 280 / 2e-92 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10005413 pacid=23182254 polypeptide=Lus10005413 locus=Lus10005413.g ID=Lus10005413.BGIv1.0 annot-version=v1.0 ATGGCTGCATCGAAGCTGAATTCGTGGGTGGTCATGGTTGCGACGATAGCATCGGTGCTAGCTTGTTTCGATATGTTTGCGATCGTCGATGCACAACCTC AAGTTCCGGGGTTCTTCATATTCGGAGACTCGCTCGTCGACAATGGCAATAACAACCGGCTTCAGTCCTTGGCTAAAGCTAATTACATGCCTTATGGCGT TGATTTTCCAGGCGGTCCGACTGGTCGGTTCTCCAATGGCAAGACCACCGTCGATGTCATTGGTATGTACGCTACGATTAACTTGATAATGTACTACAAG GCCGCTGAGCAGCTGGGATTTAACTTCATCCCGCCGTACGCGGCGGCGAGCGGGAGGACGGTGCTGGGGGGAGTGAACTATGCATCGGCGGCGGCTGGAA TCCGCGAGGAGACCGGGCAGCAATTGGGGGGGAGGATCAGCTTCAGCGGCCAAGTAAGGAATTACCAGAACACGGTGTCGCAGATCGTACGGTTGCTCGG GAGCCAAGCCGCGGCGGCTACCCATCTGAGCAGGTGCATTTTCTCGATCGGATTGGGGAGCAACGACTATCTCAACAACTATTTTATGCCTGCGTTTTAC AACACCGGCCGGCAGTTCACCCCCGACCAGTACGCCGATGATCTCATCCGGAGATACACTCAGCAACTCCAGATATTGTACAACAACGGAGCAAGGAAGT TTGTACTGATCGGAGTTGGGCAGATTGGGTGCAGCCCAAGCCAACTGGCTCAGAACAGTCCCGACGGCAAAACCTGCGTCAAGAGGGTCAACGACGCCAA TGTCATCTTCAACAACAAGCTCCGAGCCCTCGTCGACCAGTTTAATGGCAACACCCCGGATTCGAAGTTCATCTACATCAATGCCTACGGCATTTTCCAG GACTTGGTCGACAACCCTGCAGCTTTCGGAGGTCTTACATTGCTACGTCTCCCTCTGACGCATATCCTTACGACATTCGCCGCCTTGCTCAGGTCTGATT GCAGCCCCGATCCTCGTCGGATGTAG
AA sequence Show only first row Show all	>Lus10005413 pacid=23182254 polypeptide=Lus10005413 locus=Lus10005413.g ID=Lus10005413.BGIv1.0 annot-version=v1.0 MAASKLNSWVVMVATIASVLACFDMFAIVDAQPQVPGFFIFGDSLVDNGNNNRLQSLAKANYMPYGVDFPGGPTGRFSNGKTTVDVIGMYATINLIMYYK AAEQLGFNFIPPYAAASGRTVLGGVNYASAAAGIREETGQQLGGRISFSGQVRNYQNTVSQIVRLLGSQAAAATHLSRCIFSIGLGSNDYLNNYFMPAFY NTGRQFTPDQYADDLIRRYTQQLQILYNNGARKFVLIGVGQIGCSPSQLAQNSPDGKTCVKRVNDANVIFNNKLRALVDQFNGNTPDSKFIYINAYGIFQ DLVDNPAAFGGLTLLRLPLTHILTTFAALLRSDCSPDPRRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	0	1
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10004771 [exp]	1.4	0.9855
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003107 [exp]	2.4	0.9771
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10032278 [exp]	3.0	0.9765
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10019510 [exp]	3.6	0.9682
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10032806 [exp]	4.1	0.9617
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10003142 [exp]	4.4	0.9483
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	6.9	0.9712
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	7.7	0.9688
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	7.9	0.9358
AT5G13660			unknown protein		Lus10005963 [exp]	8.5	0.9688

Compare expression of checked genes

Lus10005413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.