Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 310 / 9e-104 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 308 / 4e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 305 / 1e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 302 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G33811 276 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 247 / 3e-79 SGNH hydrolase-type esterase superfamily protein (.1) AT2G19050 240 / 2e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 236 / 5e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 231 / 9e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 231 / 2e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015241 [exp] 711 / 0 AT5G45670 315 / 1e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011999 [exp] 476 / 1e-168 AT5G45670 328 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002774 [exp] 468 / 2e-165 AT5G45670 328 / 1e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 323 / 2e-108 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 314 / 6e-105 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 311 / 1e-103 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 301 / 3e-100 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 301 / 4e-100 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 293 / 7e-97 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008000 [exp] 360 / 3e-123 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 358 / 8e-123 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 349 / 4e-119 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 347 / 2e-118 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 347 / 2e-118 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 344 / 4e-117 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 343 / 1e-116 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 333 / 1e-112 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 327 / 3e-110 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008100 [exp] 325 / 9e-110 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10005414 pacid=23182207 polypeptide=Lus10005414 locus=Lus10005414.g ID=Lus10005414.BGIv1.0 annot-version=v1.0 ATGGAGTACTTAGAGATCTTACTTTTTACGACGCAACGTCGATACTCATCGGTTATGATCGTTGTAACGATCTTATTGGCGGCACTGGTCTCATCTTCGT TGGCCTCCCCACAAGTCCCGTGTTTGTTCGTTTTCGGGGACTCCCTCAACGATTGTGGCAACAACAACGGCCTCGAGACCAAGGCCAAGGCCAATTACAA GCCTTATGGGATCGACGACCCGAGTGGGGTCACCGGCCGGTTCACCAATGGCCGCACCATCGTTGATTTCCTCGCTGAAGAACTGGGATTTGATCGTCCG ATTGCGCCGTTCACAACGGTGCAAGGCGAAGACATACTCCGAGGTGTGAATTATGCGTCGGGCTCTGCCGGAATCCTGGACGAAACCGGCAATCATTTGG GCCAGAACGTGCCATTTAGCGTCCAAGTCCGGAAGCACCAAACCGTGTTTTCCAAAATAGCGAATTTGAAAGGGAACAACAACGATTCGGCCTTGGAGCA CATGGGCACATGCTTATATTACATACAGATCGGAAGCAACGACTACCTCAACAACTACTTCCAATCGGATCACACTTACAAAACAAGCAAAGAGTTCTCC GTAGAAAAATACCCCGATTATCTAATTGGCGGTTATGAAAAGCAAGTCAGGATTTTGTACGAATATGGGGCGAGGAAATTTGCGGTGGCCGGGATTGGGA AAATCGGGTGCATCCCTTACATGATGAACCTGTTCGGCACAAACGGTACCAAATGCATCGACGAAGTGAACTCAGCATCACAATTTTTCAACAACGCAGC TAAGAGACTTGTCATTAAGCTGAATGCAGAATTTAAGGACGATGCTAAGTCGATATTTATCAACTCTTACGGCATGGGTGACGGGGATCCTTCGCTTTTA GGATTCAAGAATGTGATGAGCGGATGCTGCCAGTCGAGAGAAGACGGACAGTGTGTAGCGGACCAAGTCCCCTGCGAAAACAGAGCAGAGTATGTGTTCT GGGACTCATTCCATCCGACCGAAGCTGCCAACAAAGCCACAGCAGCCCGAACCTACAAATCCTTCACACCTTCGGATTGCGACCCATTTGACGTCCACAC TTTGGCCAATTACAACCTAGGCAAGCACGAATAA
AA sequence Show only first row Show all	>Lus10005414 pacid=23182207 polypeptide=Lus10005414 locus=Lus10005414.g ID=Lus10005414.BGIv1.0 annot-version=v1.0 MEYLEILLFTTQRRYSSVMIVVTILLAALVSSSLASPQVPCLFVFGDSLNDCGNNNGLETKAKANYKPYGIDDPSGVTGRFTNGRTIVDFLAEELGFDRP IAPFTTVQGEDILRGVNYASGSAGILDETGNHLGQNVPFSVQVRKHQTVFSKIANLKGNNNDSALEHMGTCLYYIQIGSNDYLNNYFQSDHTYKTSKEFS VEKYPDYLIGGYEKQVRILYEYGARKFAVAGIGKIGCIPYMMNLFGTNGTKCIDEVNSASQFFNNAAKRLVIKLNAEFKDDAKSIFINSYGMGDGDPSLL GFKNVMSGCCQSREDGQCVADQVPCENRAEYVFWDSFHPTEAANKATAARTYKSFTPSDCDPFDVHTLANYNLGKHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10005414 [exp]	0	1

Compare expression of checked genes

Lus10005414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.