Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69850 361 / 1e-117 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G27040 352 / 1e-114 Major facilitator superfamily protein (.1.2) AT1G33440 345 / 1e-111 Major facilitator superfamily protein (.1) AT1G59740 337 / 1e-108 Major facilitator superfamily protein (.1) AT3G54140 322 / 4e-103 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 321 / 2e-102 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G26690 314 / 1e-99 Major facilitator superfamily protein (.1) AT1G68570 310 / 8e-98 Major facilitator superfamily protein (.1) AT2G02040 307 / 7e-97 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 303 / 3e-95 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015240 [exp] 968 / 0 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10032876 [exp] 396 / 2e-131 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 387 / 1e-127 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10002793 [exp] 371 / 3e-122 AT1G27040 418 / 7e-141 Major facilitator superfamily protein (.1.2) Lus10030799 [exp] 359 / 6e-117 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 352 / 3e-114 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10036710 [exp] 351 / 4e-114 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 348 / 6e-113 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10032252 [exp] 348 / 1e-112 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064100 [exp] 676 / 0 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.002G129500 [exp] 410 / 7e-137 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.014G036200 [exp] 407 / 8e-136 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.005G001400 [exp] 374 / 1e-122 AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1) Potri.010G034300 [exp] 367 / 3e-120 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.003G000800 [exp] 356 / 2e-115 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.004G229000 [exp] 348 / 2e-112 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 346 / 1e-111 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 344 / 3e-111 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.001G272900 [exp] 338 / 4e-109 AT1G59740 407 / 1e-135 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10005417 pacid=23182245 polypeptide=Lus10005417 locus=Lus10005417.g ID=Lus10005417.BGIv1.0 annot-version=v1.0 ATGGGTTTGTCTTACGATTTCGTAAATTCTGATTCTTTTGCAGTCGGGATAGCCTGTGAAAACATAGCGACTCTTGCACTGGCGGTGAACTTGGTGACGT ATTTCAACAGTGTGATGCACTTGGAAGTGGCGGAAGCAGCGAACCAGCTAACGAATTTCATGGGGGTTAGCAACATCCTTGCGATTCTAGTGGCGATTCT CGCAGATGCTTACATCGGCAGATTCAGAGCTGTTATTCTATCCGCTTGCCTCGAGATTCTGGGTCTAGCACTGTTAGCGATCCAAGCGCACCACCCGAGT ATGAAGCCACCGACTTGCAACGTATTCGACCCAACTGCAACCTGCAAGAAACTCAAAGGAGGAGATGCTGCGTATCTCTACACAGCTCTGTACTTGCTTG CAGCTGGATCAGCCGGTTTGAAAGCTTCGTTACCAGCACATGGTGCTGATCAGTTTGATGAGAAAGACCCACAAGAGGCTAGACAGCGATCTGGGTTCTT CAACTATTTGTTGCTGGCAGTTTGCAGTGGAGGTGCAATCAGCATAACGTTCATCGTTTGGATCCAGGACCACAAAGGATGGGACTGGGGATTTGCGATT GGATGCTTAGCCATTGGAGTCGGCTTGCTTGTGTTCTTCGCGGGATTGCCTCTGTACAGGATTCAACAAGTTGAAGGATCAACTGCCCTCACTGAGATTA TGCAGGTCTATGTTGCAGCTTACAGAAATAGAAAGCTTCAACTTCCAGAAGATCATTCTCAGCTCTACGAGATAAGCAAGGATAAGGAGACATCACTGGA ATTGGAGTTTGTAGCTCACAGAGACGTATTCAGGTTCCTAGATAGAGCAGCAATCCAAACAACAATAGAAGAGCCACAAAAGACTAATCCATGGAAGCTA AGCAGAGTTACTCAAGTTGAGAATGCCAAGATCTTTCTAGGAATGCTACCAATCTTCTTCTGCACAATCATCATGACACTATGCCTAGCACAGCTCCAAA CATTCTCAATCGAACAAGGTTTAACCATGGACACGTCAATCACCAAATCATTCAAAATCCCGCCAGCTTCCTTACCTATAATCCCAATCGCATTCCTAAT CATCCTAGTCCCGATCTACGATCAGCTATGCGTACCTCTGATCCGGAGATTTACCGGCCATCCAAACGGAATCACTCACCTGCAACGAATCGGAGTCGGA CTGATCCTCTCCTGCGTGTCGATGGCGGCGGCGTCGATAATGGAAGTGAAACGAAAATCCGTGGCGACAGATCACGGGATGCTCGACGCGATTCCCGTGT TGCAGCCGCTTCCGATCAGCGTATTCTGGCTCTCGATCCAGTTCTTCATATTCGGAGTCGCGGACATGTTCACGTACATCGGACTGCTGGAGTTCTTCTA CTCTGAGGCTCCCAGGGCACTGAAGTCCATATCGACTTGCTTCCTGTGGATCTCCATGGCGCTGGGTTACTTCCTCAGCACTATCTTGGTGAAGATCGTG AACAGGGCGACGCGGGATAAGACGAGCAGCGGCGGGTGGCTCGCCGGGAACAATATCAATCGGAACCATCTGAATCTCTTCTACCTGTTGCTAGCGGTAT TGAGCTTCGTGAACTTCTGTGTTTACCTCGTCGTCGCCAGGAGGTACGTTTACCGGCCTACGTCTCCTCCGGCGGAGGTTACTAATTCGGTAGCTCCGAA CTCCGAGGAGAAGAAGTCGACGGCGAATGATCAGGTGTAA
AA sequence Show only first row Show all	>Lus10005417 pacid=23182245 polypeptide=Lus10005417 locus=Lus10005417.g ID=Lus10005417.BGIv1.0 annot-version=v1.0 MGLSYDFVNSDSFAVGIACENIATLALAVNLVTYFNSVMHLEVAEAANQLTNFMGVSNILAILVAILADAYIGRFRAVILSACLEILGLALLAIQAHHPS MKPPTCNVFDPTATCKKLKGGDAAYLYTALYLLAAGSAGLKASLPAHGADQFDEKDPQEARQRSGFFNYLLLAVCSGGAISITFIVWIQDHKGWDWGFAI GCLAIGVGLLVFFAGLPLYRIQQVEGSTALTEIMQVYVAAYRNRKLQLPEDHSQLYEISKDKETSLELEFVAHRDVFRFLDRAAIQTTIEEPQKTNPWKL SRVTQVENAKIFLGMLPIFFCTIIMTLCLAQLQTFSIEQGLTMDTSITKSFKIPPASLPIIPIAFLIILVPIYDQLCVPLIRRFTGHPNGITHLQRIGVG LILSCVSMAAASIMEVKRKSVATDHGMLDAIPVLQPLPISVFWLSIQFFIFGVADMFTYIGLLEFFYSEAPRALKSISTCFLWISMALGYFLSTILVKIV NRATRDKTSSGGWLAGNNINRNHLNLFYLLLAVLSFVNFCVYLVVARRYVYRPTSPPAEVTNSVAPNSEEKKSTANDQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	0	1
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	1.4	0.9511
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007624 [exp]	2.0	0.9445
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10015240 [exp]	2.8	0.9234
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023455 [exp]	3.9	0.9175
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	5.2	0.9364
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10010587 [exp]	6.2	0.8593
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10032615 [exp]	6.5	0.9106
AT2G20870			cell wall protein precursor, p...		Lus10039801 [exp]	7.5	0.8919
AT1G61390			S-locus lectin protein kinase ...		Lus10031605 [exp]	8.5	0.8339
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10005716 [exp]	9.9	0.8098

Compare expression of checked genes

Lus10005417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.