Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29750 801 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29740 645 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 638 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 637 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 636 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 620 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 618 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 617 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 605 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56130 487 / 2e-158 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015239 [exp] 1422 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031374 [exp] 642 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 607 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 568 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 559 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 521 / 3e-170 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 518 / 6e-170 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 488 / 4e-160 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10026207 [exp] 328 / 5e-105 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072566 [exp] 1074 / 0 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.004G063500 [exp] 1048 / 0 AT1G29750 1182 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G072300 [exp] 782 / 0 AT1G29750 1024 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.004G063200 [exp] 778 / 0 AT1G29750 1019 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.004G135500 [exp] 728 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072866 [exp] 724 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072966 [exp] 719 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 717 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 717 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072941 [exp] 712 / 0 AT1G29720 947 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10005418 pacid=23182219 polypeptide=Lus10005418 locus=Lus10005418.g ID=Lus10005418.BGIv1.0 annot-version=v1.0 ATGGGTTCAAAATACTGGCAATTCAATGCTGATACCTGCGAAGTGGAAGCAGTTGGAATGGCCAAAGTGCCCCCAGGGAATGCTGAGCACACCATTGAGT GCACTTGCAACAATGGCAGCAACACAGATTGTCACGTCGTAAGGATGGCACTTAAGAATCACAACCTTCCTGGGAATCTTCCACCTCAGTTGGTCAAGCT TCCTTACCTCCAACAAGTATCCCTCGAAGCAAACCAGTTTTCTGGCACTGTTCCTCCTGAGCTTGGAGAGCTGGTCAACTTAGAAACATTGATGTTGACC TCCAATCAGTTGACTGGATCTTTGCCAATATCATTTGCAGAGTTGATAAACTTGACTGATTTCATTTTGAGGAACTGCAGCCTTTCGGGGGAGCTCCCTG ACTATGTCTGGTTGATGAAGAATATGGAAATGCTATTCTTGACTGACAACTTGCTAAGTGGAGATGTTCCTGATTCAATCTTGAAGCAAGGAAGCAACAT TGACCTATCATACAATAACTTCGAGTTGCAAGGACCTGGACACCCTGCTTGTGAAGACAACATTGGCGGAAAGGACTTGACTGTCAAGGAAAACAAAACC ACTATACTATACGAAGGAGATTCACAAATGTTAGGTGGCACAGCAAGATATTTCCTGAATGAACAGAGCTATTGGGGAATCAGTAGCACTGGAGACTTCA TGGATGACAATGATTACCAAAATACTCGTTACACCGTAGCTACACAATCATCGAGCATCCCTGAGTTGTATCAAACTGCTCGAATTGCTCCGATATCTCT CACGTACTTCCACCACTGTTTAGAAAATGGCAAGTACACTGTGAAGCTACATTTTGCGGAGATCGTGTTTACTAACGACAGAACGTATACCAGTCTTGGA AAGCGTGTGTTTGATGTCTATGTTCAGGGAAAGCTTGTGCTGAAGGATCTCAATGTTGAAGATCAGGCTGGTAGTGCTCAGAGGCCGTTAGTATTACCGA TTCCGAATGTCAATGTGACGAGTAATAGCTTGGAGATTCGATTTTATTATGCTGGCAAAGGAACAACAAGGATTCCTGATAGAGGAGTTTATGGTCCCAT CATTTCAGCCATTTCCATAGTTTCTGACGATAAAGCCTGTTCCGAACTCGATGGAGGTGGAGGAAAGAAGGGAAAAACTTATGCCATTGTTGGAGTTCTT GGAGCATTCAGCCTTGTGATTATGATTCTAGGAGCTCTTTGGTGGAAAGGCTATCTACCCGGAAACTGCACCAGACGAAAAGGTTTTGATGAAGACGACT TGCCTAAGGGTACATTCACGTTGAAGCAAATTCGAGCCGCCACGAATGACTTTGACCATGCAAACAAGATTGGAGAAGGCGGTTTCGGTCCGGTATATAA GGGTGTGTTACCGGATGGTACATTGATAGCAGTGAAGCAACTTTCATCGAAATCGAGACAAGGGAACCGCGAGTTCTTGAACGAGATAGGGATGATTTCT TGTCTGAGACACCCGAATCTCGTCAAGTTGCATGGATTTTGTGTTGAAGGGGATCAATTGTTGGTGGTGTATGAATACATGGTGAACAATAGCCTCGCTC GAGTTCTGTTTGGCAGGGAGAACTGTGAGCTGAAGCTGGACTGGCCTACAAGGTTCAAAATATGCGTCGGGATAGCTAAAGGTCTGGCCTTTCTACATGA AGAATCGGTAATCAAGATCGTTCACCGAGACATCAAGGCCACCAATGTCCTTCTCGACGAAGACTTGAACCCCAAGATATCCGATTTCGGATTAGCTAGG CTTGATGAAGAAGAGAAAACCCATGTCAGTACCCGTGTTGCTGGAACGATAGGGTATATGGCACCAGAATATGCACTTTGGGGACACCTCTCCTACAAAG CAGACGTCTATAGTTTCGGAGTTCTGATGTTGGAGATCGTTAGTGGCAAGAACAACAACAATTTCATGCCAAGTAACAACTGCGTTTGCCTCTTAGACTG GGCTTGTCATTTGCAACAGAACGGGAATCTGCTACCGATCATAGACGAGACATTGAGATCGGAAGTGAAGAAAGAAGAGGCTGAGATCATGATCAAGGTT GGTCTGTTGTGTACAAACGCATCATCATCTCTTAGGCCGGCAATGTCGGAGGTTGTAAGCATGCTCGAAGGAAGGATTCCTGTTCCCGACACGATACCGG AGCCAAGCAGTTATGCAGAAGACTTGAGGTTCAAGGCACTGCGAGACTTGCGGAGGCACGGAGAAGGGCACAGTCAGACTCAGAGCCATGGTTTCAGCCA GAACACTACTGCCGACACGTGTAATTCCTCTTTGGATACAACCACTCAAGAATTCTTTGAGATCAAGTCAGCTCCTCACTGA
AA sequence Show only first row Show all	>Lus10005418 pacid=23182219 polypeptide=Lus10005418 locus=Lus10005418.g ID=Lus10005418.BGIv1.0 annot-version=v1.0 MGSKYWQFNADTCEVEAVGMAKVPPGNAEHTIECTCNNGSNTDCHVVRMALKNHNLPGNLPPQLVKLPYLQQVSLEANQFSGTVPPELGELVNLETLMLT SNQLTGSLPISFAELINLTDFILRNCSLSGELPDYVWLMKNMEMLFLTDNLLSGDVPDSILKQGSNIDLSYNNFELQGPGHPACEDNIGGKDLTVKENKT TILYEGDSQMLGGTARYFLNEQSYWGISSTGDFMDDNDYQNTRYTVATQSSSIPELYQTARIAPISLTYFHHCLENGKYTVKLHFAEIVFTNDRTYTSLG KRVFDVYVQGKLVLKDLNVEDQAGSAQRPLVLPIPNVNVTSNSLEIRFYYAGKGTTRIPDRGVYGPIISAISIVSDDKACSELDGGGGKKGKTYAIVGVL GAFSLVIMILGALWWKGYLPGNCTRRKGFDEDDLPKGTFTLKQIRAATNDFDHANKIGEGGFGPVYKGVLPDGTLIAVKQLSSKSRQGNREFLNEIGMIS CLRHPNLVKLHGFCVEGDQLLVVYEYMVNNSLARVLFGRENCELKLDWPTRFKICVGIAKGLAFLHEESVIKIVHRDIKATNVLLDEDLNPKISDFGLAR LDEEEKTHVSTRVAGTIGYMAPEYALWGHLSYKADVYSFGVLMLEIVSGKNNNNFMPSNNCVCLLDWACHLQQNGNLLPIIDETLRSEVKKEEAEIMIKV GLLCTNASSSLRPAMSEVVSMLEGRIPVPDTIPEPSSYAEDLRFKALRDLRRHGEGHSQTQSHGFSQNTTADTCNSSLDTTTQEFFEIKSAPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29750		RKF1	receptor-like kinase in flower...		Lus10005418 [exp]	0	1
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	7.9	0.8680
AT1G34320			Protein of unknown function (D...		Lus10017136 [exp]	11.5	0.8757
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	13.6	0.8814
AT5G35180			Protein of unknown function (D...		Lus10019068 [exp]	13.9	0.8325
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	16.7	0.8685
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	19.0	0.8663
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	21.8	0.8793
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10007742 [exp]	22.5	0.8458
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	23.1	0.8742
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	24.7	0.8567

Compare expression of checked genes

Lus10005418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.