Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18880 346 / 1e-115 HSF AT-HSFA4A ,HSF A4A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) AT5G45710 328 / 3e-109 HSF RHA1, AT-HSFA4C ROOT HANDEDNESS 1, HEAT SHOCK TRANSCRIPTION FACTOR A4C, winged-helix DNA-binding transcription factor family protein (.1.2) AT1G32330 184 / 2e-52 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT5G16820 178 / 4e-50 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT4G17750 176 / 2e-49 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT4G13980 172 / 7e-48 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) AT2G26150 168 / 8e-48 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G02990 169 / 7e-47 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT3G22830 166 / 4e-46 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G03720 152 / 3e-41 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015237 [exp] 723 / 0 AT4G18880 363 / 9e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10007318 [exp] 546 / 0 AT4G18880 355 / 3e-120 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10029269 [exp] 363 / 5e-124 AT4G18880 281 / 9e-94 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10030956 [exp] 200 / 2e-58 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 197 / 2e-57 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10016634 [exp] 194 / 5e-56 AT4G13980 446 / 5e-154 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Lus10000312 [exp] 191 / 6e-55 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 189 / 2e-54 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10022546 [exp] 187 / 2e-53 AT4G13980 440 / 2e-151 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071700 [exp] 484 / 9e-170 AT4G18880 400 / 4e-138 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.004G062300 [exp] 475 / 5e-166 AT4G18880 382 / 1e-130 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.014G141400 [exp] 273 / 9e-87 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.001G138900 [exp] 200 / 5e-58 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 196 / 1e-56 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.001G320900 [exp] 195 / 2e-56 AT4G13980 508 / 3e-178 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.017G059600 [exp] 189 / 4e-54 AT4G13980 499 / 1e-174 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.013G079800 [exp] 186 / 9e-53 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.006G115700 [exp] 168 / 4e-46 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) Potri.005G214800 [exp] 156 / 5e-43 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10005420 pacid=23182206 polypeptide=Lus10005420 locus=Lus10005420.g ID=Lus10005420.BGIv1.0 annot-version=v1.0 ATGGATGAAACGCAGGGCGGTTCTGGTTCGCTGCCACCTTTTTTAGCGAAGACGTATGAAATGGTTGACGATCCTTCTTCAGATTCGGTAGTCTCATGGA GTTCGAGCAATAAAAGCTTCATAGTATGGAGTCCGCCGGAGTTTTCACGCGATCTGCTCCCTAGATTCTTTAAGCATAATAATTTCTCCAGCTTCATTAG GCAGCTTAATACTTATGGATTCAGGAAGGCAGATCCAGAACAATGGGAATTTGCAAACGAAGATTTTGTAAGAGGGCAGCCGCACCTTATGAAGAACATC CACAGACGGAAGCCTGTTCATAGCCATTCTATGCAGACCGTACAAGTGCAGCAGCAAGGGTCTAATAATAATCCATTAACTGATGCGGAGAGGCAAAGTT TGAAAGGTGACATTGAGAAGCTTAGACGTGATAAACAAGTGCTTGTTTCGGAGTTGCAGCGGAAAGAGCAGGAGAGACGAGGATTCGAGCTGCAAATGGC AGCTTTGAGAGGAAAATTTCAAGACCTGGAAAAACGTCAGCAGAGCATTTCGTCTTGCCTTACAAAAGCATTGAAGCAGCCGGGGATACTAGCGTTGGAT CTAATGCCGAAATTCGAAGGGCATGACAGAAAGAGGAGGCTACCTAGGCTAGATTGTATCGATGATGATCCCATGAAAGAAGACACTCAAATGGAGGTGT CCACATGTCTACCTAGAGGAAGTACAGCTCTTTTGAATTTGGAGAAGTGCGAGCAGTTGGAGTCATCCTTGACATTTTGGGAGAACGTTGTGAATGATGT TCGTCAAAGTGCACCGCCTTTCATACGGCGAGCATCGTCCATGGTGGAAATGGATGAGTGTACAAGTTGTGCAGATAGCCCCACACCATCTATTCTGCAA CTAAACATCGATGTTCATCCGAAATCCTCCGGCATTGACATGAACTCTGAACCTTCTGTCCCCGGAACCGGAGAGCTCAGTCCTCCAAGGGAACAGACTA CAGGAACTGCAGCCGGAGTGAATGATGTATTCTGGGAGCAATTGTTGACAGAGAATCCCGGCTCAGCAGATGCACAGGAAGTTCAGTCAGAAAGACGGGA TTCGGATGGTAGGAAAAATGATAACAAACCTAGTAGTGACCATGGAAGAAATTGGTGGAATATGAGGAGTGTAAATAGTCTTGCAGGACAGGCTCTATTC GTTGCAGCTTGCACCCCACTTGTGCCCAGTGTTCATATACTCACCGGCCAAGTTCACAAGGCTGGACCAGGACTGGTAACTTTAGCAGTCTATTCTGGTC CGGATTCTCTTAATCGGATTAATGGATGCAATTATGCAACAAAACTGATGGTACACCCTTTCTGCTTCCTCTTGGTGTCTGCTCGGCGTAAGTTCAGATG GATTTCACCTTCAAGATTCCTGCTCTTGATCTCTTGTCATTGTTGTTTGAAGCGTTCAAAATGCGGTCCCTAG
AA sequence Show only first row Show all	>Lus10005420 pacid=23182206 polypeptide=Lus10005420 locus=Lus10005420.g ID=Lus10005420.BGIv1.0 annot-version=v1.0 MDETQGGSGSLPPFLAKTYEMVDDPSSDSVVSWSSSNKSFIVWSPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANEDFVRGQPHLMKNI HRRKPVHSHSMQTVQVQQQGSNNNPLTDAERQSLKGDIEKLRRDKQVLVSELQRKEQERRGFELQMAALRGKFQDLEKRQQSISSCLTKALKQPGILALD LMPKFEGHDRKRRLPRLDCIDDDPMKEDTQMEVSTCLPRGSTALLNLEKCEQLESSLTFWENVVNDVRQSAPPFIRRASSMVEMDECTSCADSPTPSILQ LNIDVHPKSSGIDMNSEPSVPGTGELSPPREQTTGTAAGVNDVFWEQLLTENPGSADAQEVQSERRDSDGRKNDNKPSSDHGRNWWNMRSVNSLAGQALF VAACTPLVPSVHILTGQVHKAGPGLVTLAVYSGPDSLNRINGCNYATKLMVHPFCFLLVSARRKFRWISPSRFLLLISCHCCLKRSKCGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10005420 [exp]	0	1
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	3.9	0.8486
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	4.6	0.8399
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	6.2	0.8454
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018377 [exp]	7.4	0.8137
AT2G25800			Protein of unknown function (D...		Lus10012969 [exp]	10.0	0.8146
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	11.8	0.8275
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	13.0	0.8123
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	14.5	0.7995
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021202 [exp]	15.0	0.8148
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	15.7	0.8187

Compare expression of checked genes

Lus10005420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.