Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76570 454 / 8e-161 Chlorophyll A-B binding family protein (.1) AT3G27690 210 / 5e-66 LHCB2.3, LHCB2:4 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) AT2G05100 209 / 1e-65 LHCB2.3, LHCB2.1 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) AT2G05070 206 / 1e-64 LHCB2.2 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) AT5G54270 202 / 5e-63 LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, light-harvesting chlorophyll B-binding protein 3 (.1) AT2G34420 199 / 8e-62 LHCB1.5, LHB1B2 PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5, photosystem II light harvesting complex gene B1B2 (.1) AT1G29930 197 / 6e-61 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) AT1G29920 197 / 7e-61 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 197 / 7e-61 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) AT2G34430 196 / 1e-60 LHCB1.4, LHB1B1 light-harvesting chlorophyll-protein complex II subunit B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015235 [exp] 561 / 0 AT1G76570 445 / 9e-159 Chlorophyll A-B binding family protein (.1) Lus10001169 [exp] 221 / 2e-70 AT3G27690 484 / 1e-175 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) Lus10001741 [exp] 220 / 6e-70 AT3G27690 481 / 1e-174 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) Lus10008191 [exp] 211 / 3e-66 AT1G29910 452 / 5e-163 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10027966 [exp] 210 / 7e-66 AT1G29910 446 / 2e-160 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10008594 [exp] 207 / 1e-64 AT1G29930 445 / 4e-160 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10042219 [exp] 206 / 1e-64 AT1G29930 444 / 1e-159 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10037875 [exp] 204 / 2e-63 AT5G54270 460 / 3e-166 light-harvesting chlorophyll B-binding protein 3 (.1) Lus10038575 [exp] 201 / 1e-62 AT5G54270 462 / 9e-167 light-harvesting chlorophyll B-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G258600 [exp] 463 / 2e-164 AT1G76570 491 / 6e-176 Chlorophyll A-B binding family protein (.1) Potri.014G165100 [exp] 204 / 7e-64 AT2G05100 507 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) Potri.002G221400 [exp] 201 / 1e-62 AT2G05070 499 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) Potri.005G239300 [exp] 201 / 2e-62 AT2G34430 485 / 4e-176 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.005G239200 [exp] 201 / 2e-62 AT2G34430 484 / 2e-175 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.011G079500 [exp] 201 / 2e-62 AT2G34430 480 / 6e-174 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.001G407100 [exp] 200 / 3e-62 AT5G54270 478 / 2e-173 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.011G126700 [exp] 198 / 7e-62 AT5G54270 446 / 3e-161 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.002G189300 [exp] 197 / 6e-61 AT2G34430 448 / 2e-161 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.019G063101 [exp] 180 / 5e-54 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10005421 pacid=23182236 polypeptide=Lus10005421 locus=Lus10005421.g ID=Lus10005421.BGIv1.0 annot-version=v1.0 ATGCATGGAAGAAGAAACACGAACCACTCATATGATCAGCCCGCCGCCGCCACCTCAGACGCGATAACAGTCGCCGGCCGCCGATTCTCATCCATCCGCT GCTTCTCCACCACAACCTTCAACTTCCGTCCGACTCCAAAAGCTGCCAAATGGCATCTCCGCCACGTGTCTGCTCCTCCGTCGTCGTATCGTCAGCGAGC CTCTTCCGTCGCGCTCCTCCTCCCTTCTGCTGCAAAGCTTCATGGCAAGAGGTCCTTCCCGCTCCCTGTCGCCGGAGTTGTGGCGTTCTCGGCGATCCCG TTCACTGCCGTCAAGGCGATCGCGAACAGCTCGCTGGGAGAGACGCTTCGGACGCGTTTGGAGGAGCGGAAGAAAGTCGCGATCAAGGAATCCTCTGAAT TCCGGCGTTTGGCAGAGAAAGCCCGACGAGATAGTATTTGGTATGGAGAAGATCGTCCACGGTGGCTGGGCAGCATTCCGTATGATGATTACCCGCCACA TCTCGCCGGTGAACTCCCCGGAGACTATGGATTCGATGTTGCAAACCTCAGTGAAGACCCTAGTGCTCTCCAGAAGTATTTCAATTTCGAGATACTGCAT TGTAGATGGGCGATGCTAGGTGCTCTTGGTGCTGTGATTCCTGAAGTGTTGGATTTGTTCGGCACAGTCGATTTCGGTGAGCCTGTCTGGTGGCGAGTTG GCTACGCCAAGCTTCAGGGAGATACTCTGGACTATCTGGGAATTCCAGGGCTACACTTGGCTGGAAGCCAAGGAATCATCGTCATTGCTCTCTGCCAAGT TCTTCTAATGGTGGGACCGGAATATGCGAGATACTGCGGAATCGAGGCATTGGAGCCTTTAGGAATCTACTTGCCGGGCGACGAGAACTACCCAGGAGGG TCGTTGTTCGATCCGCTTAACCTCGCTGGCGAACCTGTAGCTTTCGAGGAGCTGAAGGTGAAGGAGATCAAGAACGGACGGCTGGCGATGGTCGCTTGGT TAGGGTTCTACGTCCAAGCTGCCGTTACGGGTAAAGGTCCTATACAAAACCTCGTCGAGCATGTTTCGGATCCGTTTCATAACAATGTACTGTCAGTGCT CAAGATCATGTAG
AA sequence Show only first row Show all	>Lus10005421 pacid=23182236 polypeptide=Lus10005421 locus=Lus10005421.g ID=Lus10005421.BGIv1.0 annot-version=v1.0 MHGRRNTNHSYDQPAAATSDAITVAGRRFSSIRCFSTTTFNFRPTPKAAKWHLRHVSAPPSSYRQRASSVALLLPSAAKLHGKRSFPLPVAGVVAFSAIP FTAVKAIANSSLGETLRTRLEERKKVAIKESSEFRRLAEKARRDSIWYGEDRPRWLGSIPYDDYPPHLAGELPGDYGFDVANLSEDPSALQKYFNFEILH CRWAMLGALGAVIPEVLDLFGTVDFGEPVWWRVGYAKLQGDTLDYLGIPGLHLAGSQGIIVIALCQVLLMVGPEYARYCGIEALEPLGIYLPGDENYPGG SLFDPLNLAGEPVAFEELKVKEIKNGRLAMVAWLGFYVQAAVTGKGPIQNLVEHVSDPFHNNVLSVLKIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76570			Chlorophyll A-B binding family...		Lus10005421 [exp]	0	1
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10012683 [exp]	1.0	0.8466
AT5G43260			chaperone protein dnaJ-related...		Lus10015783 [exp]	2.0	0.8313
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021640 [exp]	3.0	0.8142
					Lus10026843 [exp]	3.3	0.7717
AT2G34450			HMG-box (high mobility group) ...		Lus10025391 [exp]	4.5	0.7964
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10014128 [exp]	5.7	0.7807
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008022 [exp]	7.9	0.7822
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10026986 [exp]	9.8	0.7832
AT4G09620			Mitochondrial transcription te...		Lus10009420 [exp]	12.2	0.7779
AT4G29070			Phospholipase A2 family protei...		Lus10030011 [exp]	13.7	0.7432

Compare expression of checked genes

Lus10005421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.