Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29300 343 / 7e-115 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT1G53380 302 / 1e-98 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 289 / 2e-93 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G45260 247 / 1e-77 Plant protein of unknown function (DUF641) (.1) AT3G60680 171 / 8e-48 Plant protein of unknown function (DUF641) (.1) AT4G34080 145 / 1e-40 Plant protein of unknown function (DUF641) (.1) AT4G33320 135 / 1e-36 Plant protein of unknown function (DUF641) (.1) AT2G32130 131 / 2e-36 Plant protein of unknown function (DUF641) (.1) AT5G58960 127 / 4e-32 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G30380 103 / 1e-23 Plant protein of unknown function (DUF641) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015232 [exp] 679 / 0 AT1G29300 377 / 7e-128 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10007312 [exp] 538 / 0 AT1G29300 433 / 2e-149 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 523 / 0 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 241 / 2e-75 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 236 / 2e-73 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 177 / 2e-50 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 148 / 4e-40 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10024190 [exp] 146 / 4e-39 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 145 / 5e-39 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071000 [exp] 433 / 4e-150 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.004G061600 [exp] 423 / 4e-146 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.011G108000 [exp] 322 / 3e-106 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.001G387700 [exp] 320 / 1e-105 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145900 [exp] 256 / 2e-81 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 171 / 2e-48 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 171 / 3e-48 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 151 / 3e-42 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.013G155400 [exp] 150 / 1e-40 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.009G041000 [exp] 152 / 2e-40 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [flax] [poplar] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Lus10005424 pacid=23182217 polypeptide=Lus10005424 locus=Lus10005424.g ID=Lus10005424.BGIv1.0 annot-version=v1.0 ATGGAAACGACGACGACGACGCTCCGATCAATCCCCGACGGAAAAAACAAGAGCAAGATCTCGAGAAGGTTCAACAAATCAATCAAAGTCAACGCCGCCG ACGTCGACAAGGAATCCAAGGCCAAGCGAACCGCCGTCCTGGAAGCACTCCTCGCCAAGATGTTCGCCGAGGTCACCTCCATCAAAGCCGCCTACGCCGA GCTCCAGACAGCTCAGAATCCTTACAACGCGGAAATGATCCAGTCCGCCGACCACGACGTCGTCGAGGAGCTCAAGACTCTATCCCACCTGAAGCGGAGC TTCGTCAGAGGCGAGCTCGACCTGATCTCGCCGCAGGTGACCGTGATGCTCGCCGAGATTCAGGAGCAGCAGAGCCTGATCAAGACTTACCAGATCACTA TCAAGAAGCTCGAAGCCGAATCGGATTCGAAATCGTCGGAGGTACAATCGATTAAGAAGCTTCTGGATGATTGCGTTTCGTTGAATCGGTCGATCGAGAG CGGTAGTCAATCGGCGATGTTCGATTGCAAGCTCAACGATCTTAATCCGTCTCATTTCGTGCGGTGCCTTCACTACACTTCAAGATCGGTTAGAAGCTTC ACGAAATTGATGGTCCGTGAGATGGAATCAGCTCGTTGGGATCTCAATTCAGCAGCGACGGCGATCGAACCGGAATTAGGTTTTCCGATTTCGAAATGGA ATCGATGTTTCGTTTTCGAGTCGTTTGTGGCGAAGACGATGTTCGAAGGTTGTTTCAATCAGAATGAATCATTGTCAATCCGCCGCGAGGATTTGTTCAG CGAGTTCAAGAGCATGAAATCGGCGAATCTGAGGCAGTATCTGGCGAAGAATTCGAGCTCGTCGTTCGCGAATTTCACCAGAGGGAAGTACACGCTTCTG GTGCATCCGAAAATGGAGTGTTCGCTGTTTGGCAATTTGAGTCAGAGGAAAGCGGTGATCGGCGGCGTGTTTCCCGATACGGAGTTTTTCGGTCAGTTCG CGGAGATGGCGCGGCGCGTGTGGGTTTTAAATCTGCTGGCGATGTCGTTCGGCGAGAGTCTGCATGTTTTTCAGGTGAGGAAGAGCTGCCGTTTCTCGGA GGTGTATATGGAGAGTGTGAGCGAGGAGTACGGTGGCGGCGGTGGTGATCTTCGGGTGGGGTTTACGGTGGTTCCGGGGTTTAAGATCGGGAAGACGGTG ATACAGAGTCAGGTTTATTTGACGCCGGCGGAGGCGGAGGGTACCTCTCCGGTCCGGCAATGA
AA sequence Show only first row Show all	>Lus10005424 pacid=23182217 polypeptide=Lus10005424 locus=Lus10005424.g ID=Lus10005424.BGIv1.0 annot-version=v1.0 METTTTTLRSIPDGKNKSKISRRFNKSIKVNAADVDKESKAKRTAVLEALLAKMFAEVTSIKAAYAELQTAQNPYNAEMIQSADHDVVEELKTLSHLKRS FVRGELDLISPQVTVMLAEIQEQQSLIKTYQITIKKLEAESDSKSSEVQSIKKLLDDCVSLNRSIESGSQSAMFDCKLNDLNPSHFVRCLHYTSRSVRSF TKLMVREMESARWDLNSAATAIEPELGFPISKWNRCFVFESFVAKTMFEGCFNQNESLSIRREDLFSEFKSMKSANLRQYLAKNSSSSFANFTRGKYTLL VHPKMECSLFGNLSQRKAVIGGVFPDTEFFGQFAEMARRVWVLNLLAMSFGESLHVFQVRKSCRFSEVYMESVSEEYGGGGGDLRVGFTVVPGFKIGKTV IQSQVYLTPAEAEGTSPVRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10005424 [exp]	0	1
AT5G38700			unknown protein		Lus10010019 [exp]	3.2	0.8152
AT1G47380			Protein phosphatase 2C family ...		Lus10009763 [exp]	4.0	0.8402
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10037273 [exp]	10.5	0.8237
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10025892 [exp]	10.6	0.8223
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039475 [exp]	12.4	0.8098
AT3G20600		NDR1	non race-specific disease resi...		Lus10043067 [exp]	12.5	0.8310
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10022848 [exp]	14.7	0.8010
AT2G18630			Protein of unknown function (D...		Lus10040334 [exp]	17.6	0.7813
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10029215 [exp]	19.4	0.7909
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10037887 [exp]	20.8	0.7837

Compare expression of checked genes

Lus10005424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.