Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06410 1299 / 0 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT4G17770 1166 / 0 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G68020 1129 / 0 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G23870 1080 / 0 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G70290 1072 / 0 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT1G60140 1060 / 0 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT2G18700 1005 / 0 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) AT1G16980 428 / 3e-137 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT1G78580 423 / 4e-134 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT4G27550 410 / 1e-130 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015231 [exp] 1681 / 0 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10007311 [exp] 1537 / 0 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10029258 [exp] 1528 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10020741 [exp] 1230 / 0 AT1G06410 1278 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10029821 [exp] 1227 / 0 AT1G06410 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10034585 [exp] 1164 / 0 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 1144 / 0 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10030853 [exp] 1112 / 0 AT1G60140 1388 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10030635 [exp] 1095 / 0 AT1G60140 1367 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G070900 [exp] 1493 / 0 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.004G061500 [exp] 1466 / 0 AT1G06410 1286 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.003G094500 [exp] 1197 / 0 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.001G139500 [exp] 1173 / 0 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.010G104500 [exp] 1159 / 0 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.008G136500 [exp] 1152 / 0 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.012G078500 [exp] 1125 / 0 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.015G074000 [exp] 1119 / 0 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.006G175500 [exp] 1001 / 0 AT2G18700 1151 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.018G097700 [exp] 1001 / 0 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase CL0113 [flax] [poplar] GT-B PF00982 [flax] [poplar] Glyco_transf_20 Glycosyltransferase family 20
Representative CDS sequence Show only first row Show all	>Lus10005425 pacid=23182220 polypeptide=Lus10005425 locus=Lus10005425.g ID=Lus10005425.BGIv1.0 annot-version=v1.0 ATGATGTCCAAATCGTATACCAATCTTTTGGATCTAGCTTCCGGGAACTTTCCGGCAATGAGTCAGCCTAGGGAGAAGAGGAGGATGACTAGGGTATCGA CTGTGATAGGGGTTATATCTGAGCTTGATGATGATCAAGCGAATAGTGTTGCGTCGGACGTGCAGTCTTCGATGATTCAGGACCGGATTATAATCGTGGC GAATCAGCTTCCGGTGAAGGCCAAGCGTAGGCCTGATAATAAAGGCTGGAGCTTTAGTTGGGATGAGGATTCCTTAATGCTACAGTGTAAAGATGGTTTC CATGAAGATATGGAAGTCATCTATGTCGGCTCGTTGAGAGTTGATGTCGATCCGGTCGAGCAAGACGATGTCTCCCAGCTTTTGTTGGATAAGTTCAAGT GTGTCCCTGCATTTCTGCCTCCTGATATTTTGACCAAGTTTTATCATGGATTTTGTAAGCAGCATTTGTGGCCTCTTTTCCATTACATGCTTCCCTTTTC GGCCAATCACGGTGGGAGATTCGATCGGTCCTTGTGGGAAGCGTACGTTGCAGCGAATAAAATCTTCTCCCAACGAGTTATCGAAGTTATCAATCCGGAA GATGACTATGTCTGGATTCATGACTATCACTTAATGGTTCTGCCAACTTTCTTGAGAAGAAGGTTCACCAGATTACGAATGGGGTTTTTCCTCCATAGTC CGTTTCCGTCCTCCGAGATATACCGGACGCTACCCGTGAGGGAGGAGATCCTGAAGGCGCTTTTAAATTCCGACCTTATCGGTTTCCACACCTTCGATTA CGCTAGGCATTTCTTGTCGTGCTGTAGTCGGATGCTGGGGTTGGAGTATCAGTCGAAACGAGGGTATATCGGGTTGGAGTACTATGGTAGGACTATCGGG ATCAAGATCATGCCTGTGGGGATACACATGGGACAGATCGAGAATGTCTTGAAGCATGCCGATAGTGAGTGGAGGGTGAAAGAACTGAAGCAGCAGTTCG AAGGGAAGACGGTTTTACTCGGTGTTGATGATATGGACATCTTTAAAGGTCTTAATTTGAAGCTACTGGCGATGGAGCAGATGCTGAAGCAGCATCCGAA ATGGCAAGGGAGGGCGGTTCTGGTCCAGATTGTGAATCCTGCTCGTGGAAGAGGGAAAGATCTCGAAGAAGTGCAGGCTGAGATTGAGGAGAGTTGCAAG AGGATTAACAAGACTTTCGGTAGACCTGGTTATGAACCGGTTATCTTTGTTGACCGGCCGGTTTCTCTTAGCGAACGAGCAGCTTACTATAATGTTGCGG AATGTGTTGTCGTGTCTGCTGTCAGGGACGGGATGAATCTTACCCCGTACGAGTATATAGTTTGCAGGCAAGGTATCTCGAGTTCCGGTTCTAGTTCGGA TTCTAGTGTGCCTAAGAAGAGCATGCTAATTGTTTCCGAATTTATCGGATGTTCTCCTTCACTCAGTGGTGCGATTCGGGTCAATCCGTGGAACATTGAG GCATCTTCCGAGGCAATGAACGAGGCGATCTCGATGGCTGATCAGGAGAAGCAACTGCGACACGAGAAGCACTACAGATATGTCAGTACTCACGATGTGG CGTACTGGTCAAGAAGCTTCTTCCAAGATCTGGAAAGGGCTTGCAAGGATCATTTCCGGAGGCGGTGTTGGGGTATAGGGTTCAGCTTTGGTTTCAGAGT CGTGGCGCTCGATCCTAACTTTAAGAAACTGAATGTGGATGTTATTCTGAACGGTTACTTGCGGTCCAAGAAAAGGGCTATCTTACTGGATTATGATGGC ACGGTAATGCCACAAACATCGATTAATAAGTCACCTAGTCAGGAAGTGCTTTCGATAATCAATACTCTTTGTGGTGATGTTAAAAACACGGTTTTCGTCG TTAGTGGAAGAGGAAGAGATAGTTTAGGCAAGTGGTTTGAGCCTTGTAAGAAGCTTGGAATCGCTGCTGAACATGGCTATTTCTTAAGGTGGTCTGCTGA CAAGGACTGGGAAACTTGTGGACCGAACTCGGATTTCGGGTGGTTTCAGATCGCTGAGCCTGTTATGAAGTTGTATACAGAAGCAACAGATGGTTCTTAC ATTGAGACCAAGGAGAGTGCCTTGGTCTGGCACCATAGAGATGCAGATTCTGGTTTCGGTGCTAGCCAGGCGAAGGAGATGTTGGATCATCTTGAAAGTG TTCTTGCAAATGAACCTGTCACTGTTAGAAGTGGTCAATTCATTGTGGAAGTAAAGCCACAGGGGGTTAGCAAAGGCCTGGTGGCCGAGAAAATACTCAC ATCCATTGCCGAAGGCGGAAGACAGGCGGACTTCGTCCTGTGCATTGGCGACGACAGGTCAGACGAAGACATGTTTGCGAGGATCGGCAATGCCTCAACC AGCCCGCACGTATTCGCATGCACGGTGGGACAGAAGCCGAGCAAAGCCAAGTACTACTTGGACGACACGACAGATGTTATCAACATGCTCAGAGCTCTTG CCGACGATTCAGACCCTTCTCCTTCTGATGAAGAAGAAAGCTCCCCATAA
AA sequence Show only first row Show all	>Lus10005425 pacid=23182220 polypeptide=Lus10005425 locus=Lus10005425.g ID=Lus10005425.BGIv1.0 annot-version=v1.0 MMSKSYTNLLDLASGNFPAMSQPREKRRMTRVSTVIGVISELDDDQANSVASDVQSSMIQDRIIIVANQLPVKAKRRPDNKGWSFSWDEDSLMLQCKDGF HEDMEVIYVGSLRVDVDPVEQDDVSQLLLDKFKCVPAFLPPDILTKFYHGFCKQHLWPLFHYMLPFSANHGGRFDRSLWEAYVAANKIFSQRVIEVINPE DDYVWIHDYHLMVLPTFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYYGRTIG IKIMPVGIHMGQIENVLKHADSEWRVKELKQQFEGKTVLLGVDDMDIFKGLNLKLLAMEQMLKQHPKWQGRAVLVQIVNPARGRGKDLEEVQAEIEESCK RINKTFGRPGYEPVIFVDRPVSLSERAAYYNVAECVVVSAVRDGMNLTPYEYIVCRQGISSSGSSSDSSVPKKSMLIVSEFIGCSPSLSGAIRVNPWNIE ASSEAMNEAISMADQEKQLRHEKHYRYVSTHDVAYWSRSFFQDLERACKDHFRRRCWGIGFSFGFRVVALDPNFKKLNVDVILNGYLRSKKRAILLDYDG TVMPQTSINKSPSQEVLSIINTLCGDVKNTVFVVSGRGRDSLGKWFEPCKKLGIAAEHGYFLRWSADKDWETCGPNSDFGWFQIAEPVMKLYTEATDGSY IETKESALVWHHRDADSGFGASQAKEMLDHLESVLANEPVTVRSGQFIVEVKPQGVSKGLVAEKILTSIAEGGRQADFVLCIGDDRSDEDMFARIGNAST SPHVFACTVGQKPSKAKYYLDDTTDVINMLRALADDSDPSPSDEEESSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	0	1
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10028990 [exp]	2.4	0.8965
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	3.2	0.8778
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	3.5	0.8622
					Lus10008547 [exp]	3.5	0.8467
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10028862 [exp]	5.1	0.8137
AT4G30780			unknown protein		Lus10035819 [exp]	5.9	0.8471
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10018353 [exp]	6.0	0.8348
AT2G38480			Uncharacterised protein family...		Lus10012216 [exp]	6.5	0.8406
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	7.2	0.8530
AT3G24120	GARP		Homeodomain-like superfamily p...		Lus10039123 [exp]	13.7	0.7915

Compare expression of checked genes

Lus10005425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.