Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20060 389 / 1e-137 Ribosomal protein L4/L1 family (.1) AT1G07320 82 / 3e-18 EMB2784, RPL4 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018212 [exp] 100 / 5e-25 AT1G07320 332 / 8e-115 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4) Lus10040693 [exp] 99 / 5e-24 AT1G07320 334 / 2e-114 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G004800 [exp] 396 / 3e-140 AT2G20060 465 / 1e-166 Ribosomal protein L4/L1 family (.1) Potri.006G270501 [exp] 126 / 3e-37 AT2G20060 131 / 3e-39 Ribosomal protein L4/L1 family (.1) Potri.006G221100 [exp] 94 / 2e-22 AT1G07320 343 / 4e-119 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00573 [flax] [poplar] Ribosomal_L4 Ribosomal protein L4/L1 family
Representative CDS sequence Show only first row Show all	>Lus10005427 pacid=23182230 polypeptide=Lus10005427 locus=Lus10005427.g ID=Lus10005427.BGIv1.0 annot-version=v1.0 ATGGCCGCGAAAGGAATACTTCGCTCTCTTGGATCCTCCTTGTCTTCTCTCCGTCGTTGCCACGGCCTTTATCAAGACCTGGTGATTCCTGTGACGAATT TCCATAACGAGGACAAAGGGTTCATGGTTCTAGCTGGTGATGTGTTTGATGTGCCGATTCGAAAGGACATTGTTCATCGAGTTGTTTTGTGGCAACGTGC CAAACGGCAGCAAGGGACGCATTCAACAAAAACAATCAGTGAGGTTAGTGGGACGGGTAGAAAGCCATGGAATCAGAAGGGAACTGGAAGAGCTAGGCAC GGGACTCTCCGTGGACCTCAGTTCAGAAAAGGTTGTGTTATGCATGGCCCCAAACCTCGAAGCCATGCCTTTAAATTAAATAAGAAGGTTCGACGTTTAG GGTTGAAGATTGCGCTGACCGCCCGTGCAGCAGAAGGAAAGCTGCTAGTCTTTGATGATCTGGAGGTTCCTACACACAAGACCAAGAACATCGTCACCTA TGTTCAGCAAATGGAGAACACAAAGAAGCCACTTTTTGTTGATGACGGTACTGTTAACGAAAAGCAAAAGAAACTACTTTTGGTTGATGGTGATACTATT AACGAAAAGCTGAAGTTGGCTACACAGAATCTGCACTATGTCAATGTGCTGCCCTCAATCGGGTTGAATGTCTACAGTATGCTGCTTCATGACACACTGG TGATGACCCGTTCTGCCGTGAACAAAATTGTAGAACGGATGCACACTCCGATTAATCGCTGA
AA sequence Show only first row Show all	>Lus10005427 pacid=23182230 polypeptide=Lus10005427 locus=Lus10005427.g ID=Lus10005427.BGIv1.0 annot-version=v1.0 MAAKGILRSLGSSLSSLRRCHGLYQDLVIPVTNFHNEDKGFMVLAGDVFDVPIRKDIVHRVVLWQRAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARH GTLRGPQFRKGCVMHGPKPRSHAFKLNKKVRRLGLKIALTARAAEGKLLVFDDLEVPTHKTKNIVTYVQQMENTKKPLFVDDGTVNEKQKKLLLVDGDTI NEKLKLATQNLHYVNVLPSIGLNVYSMLLHDTLVMTRSAVNKIVERMHTPINR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20060			Ribosomal protein L4/L1 family...		Lus10005427 [exp]	0	1
AT4G02220			zinc finger (MYND type) family...		Lus10029718 [exp]	4.0	0.7744
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10015441 [exp]	5.4	0.8538
AT4G31985			Ribosomal protein L39 family p...		Lus10019065 [exp]	5.9	0.7837
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	7.9	0.8162
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10005561 [exp]	9.8	0.7693
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10015861 [exp]	12.5	0.8126
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10003505 [exp]	12.6	0.7734
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10026937 [exp]	12.6	0.7594
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	16.1	0.7827
AT3G07590			Small nuclear ribonucleoprotei...		Lus10025186 [exp]	19.1	0.7837

Compare expression of checked genes

Lus10005427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.