Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42760 105 / 1e-27 unknown protein AT2G31560 55 / 4e-09 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G43340 52 / 3e-08 Protein of unknown function (DUF1685) (.1) AT1G05870 51 / 7e-08 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT2G15590 39 / 0.0008 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT4G33985 39 / 0.001 Protein of unknown function (DUF1685) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015228 [exp] 293 / 2e-101 AT2G42760 115 / 5e-31 unknown protein Lus10007299 [exp] 125 / 4e-35 AT2G42760 115 / 7e-31 unknown protein Lus10015227 [exp] 113 / 9e-31 AT2G42760 93 / 1e-22 unknown protein Lus10041518 [exp] 115 / 2e-30 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029248 [exp] 69 / 5e-14 AT2G42760 61 / 6e-11 unknown protein Lus10019924 [exp] 61 / 8e-11 AT2G42760 56 / 7e-09 unknown protein Lus10025562 [exp] 49 / 6e-07 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Lus10027022 [exp] 49 / 7e-07 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10026494 [exp] 43 / 3e-05 ND 36 / 0.004
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059900 [exp] 138 / 3e-40 AT2G42760 99 / 6e-25 unknown protein Potri.011G069900 [exp] 127 / 4e-36 AT2G42760 89 / 4e-21 unknown protein Potri.006G129800 [exp] 75 / 6e-16 AT2G42760 65 / 4e-12 unknown protein Potri.007G126700 [exp] 59 / 2e-10 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 50 / 2e-07 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [flax] [poplar] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Lus10005429 pacid=23182208 polypeptide=Lus10005429 locus=Lus10005429.g ID=Lus10005429.BGIv1.0 annot-version=v1.0 ATGGAGTCAGCTGAATTCCTCACCGTCTACGATTCCCGCTGGTTCGAAACCGAAATCTTCGGCTCAACCGAATCTTCACCAGATTCCCCGCCGGATTCCC CCACCTTAGCCAGCATGTATCTCCAGATCCAGAAGCAACAACAACAACAACAACAAACTCCGGCGGCGAGTTCAATTACAAGACTCAACCGATCGACGAT GATCAGATCCATCAGCGACAACGTCTACTCCAAACCCACTTTCGACTCCGGCGAATCGTCGGATTCGCCGGACTCCGTACTCGCTCCACCGCCGACGCAG CATAGGAAAAAGAGCCGGTTTGTCGGAAGCATGAAAATTGAAGGGAGCAAGAGCATGACTTCGTTGGAATTCGAGGAATTGAAAGGGTTTATGGATTTGG GTTTTGTCTTCTCCGAGGAGGATAAGGATTACCCGAGGCTGGTTTCGATTTTGCCCGCGTTGCAGAGACTTGGGAAAACAGAGGAGTCCCCTGTTCCTCC GCCGGCGAGGCCGTATTTGTCGGAAGCTTGGGCGGTTAAGGAAGAAGAAGAGAGGAAGCAGAAGGAGAAGGAGATTGTTAGTCCGTTGGTGAATTGGAGA GCTCCGATTGGAAACGAAGTTGAGTTGAAAGATAGCTTGAAGTTGTGGGCTCATACGGTTGCATCCACTGTTAGAATTTAG
AA sequence Show only first row Show all	>Lus10005429 pacid=23182208 polypeptide=Lus10005429 locus=Lus10005429.g ID=Lus10005429.BGIv1.0 annot-version=v1.0 MESAEFLTVYDSRWFETEIFGSTESSPDSPPDSPTLASMYLQIQKQQQQQQQTPAASSITRLNRSTMIRSISDNVYSKPTFDSGESSDSPDSVLAPPPTQ HRKKSRFVGSMKIEGSKSMTSLEFEELKGFMDLGFVFSEEDKDYPRLVSILPALQRLGKTEESPVPPPARPYLSEAWAVKEEEERKQKEKEIVSPLVNWR APIGNEVELKDSLKLWAHTVASTVRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42760			unknown protein		Lus10005429 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	1.0	0.9471
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	2.4	0.9417
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	3.0	0.9354
AT5G47060			Protein of unknown function (D...		Lus10019494 [exp]	3.5	0.9029
AT5G14360			Ubiquitin-like superfamily pro...		Lus10014884 [exp]	3.5	0.9186
					Lus10017966 [exp]	4.0	0.9298
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	4.5	0.9217
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10003492 [exp]	4.9	0.9146
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	5.3	0.9172
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10022915 [exp]	5.5	0.9042

Compare expression of checked genes

Lus10005429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.