Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18760 276 / 2e-91 AtRLP51 receptor like protein 51 (.1) AT5G45770 223 / 1e-70 AtRLP55 receptor like protein 55 (.1) AT4G28650 94 / 1e-21 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G11080 89 / 4e-20 AtRLP35 receptor like protein 35 (.1) AT4G36180 89 / 8e-20 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 87 / 3e-19 HSL2 HAESA-like 2 (.1) AT5G23400 85 / 1e-18 Leucine-rich repeat (LRR) family protein (.1) AT4G20270 84 / 2e-18 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT3G05650 84 / 2e-18 AtRLP32 receptor like protein 32 (.1) AT4G20940 84 / 3e-18 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015226 [exp] 401 / 2e-140 AT4G18760 401 / 2e-137 receptor like protein 51 (.1) Lus10007294 [exp] 325 / 1e-110 AT4G18760 391 / 1e-133 receptor like protein 51 (.1) Lus10029243 [exp] 161 / 2e-50 AT4G18760 168 / 2e-51 receptor like protein 51 (.1) Lus10039985 [exp] 111 / 1e-30 AT5G45770 120 / 3e-33 receptor like protein 55 (.1) Lus10030587 [exp] 92 / 9e-21 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019036 [exp] 88 / 1e-19 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10030634 [exp] 88 / 2e-19 AT3G47570 755 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 88 / 2e-19 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006045 [exp] 88 / 2e-19 AT2G25790 858 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059500 [exp] 285 / 7e-95 AT4G18760 375 / 7e-127 receptor like protein 51 (.1) Potri.011G069500 [exp] 284 / 2e-94 AT4G18760 375 / 4e-127 receptor like protein 51 (.1) Potri.019G078400 [exp] 99 / 3e-23 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G033900 [exp] 91 / 2e-20 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G092700 [exp] 90 / 3e-20 AT1G53440 503 / 4e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.017G115900 [exp] 90 / 3e-20 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007600 [exp] 89 / 6e-20 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.011G073091 [exp] 89 / 8e-20 AT1G29740 944 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.013G133100 [exp] 88 / 1e-19 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G211800 [exp] 87 / 2e-19 AT2G42800 474 / 7e-166 receptor like protein 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10005430 pacid=23182237 polypeptide=Lus10005430 locus=Lus10005430.g ID=Lus10005430.BGIv1.0 annot-version=v1.0 ATGCGCAAGCTCACATCTTTAACCATCACCAACGCCAATCTCTCCGGCGCCATCCCCAAACACCTCGCCGACAACAACAGCAACCTCACCGTCGTCGATT TCTCCCGTAATAGTCTCAAGGGAAGGATTCCAAGCTCCATTGCTGTACTGGAGAATCTCCAGAGTCTGAATCTCTCATCCAATTCGCTCTCTGGCGAGCT CCCGGCCAACTTCGGCGACCTAATCTCACTAAAGAATGTATCTCTAGCGTCGAATTCGTTGTCCGGTTCGATTCCGGATTCGATGGCCTCGATCTCCGAG CTGGAGCATCTCGATCTGAGCTCGAATCAGTTCAACGGCACGATCCCCAAGTTCTTATCCGAGATGAAGAATCTGAAGCATTTGAATCTTGCTAACAATG GCTTCCATGGCGTTCTTCCGTTCAATGCCAGTTTTCTGAAGAGACTGGATGTGTTCAGAATCAAAGGGAATGACAATCTCTGCTACAACCGTACAATTCT CTCACAGTCGAAATTGAAGCTCGGGATTGCTGCTTGCGATAAGCACGGATTGCCGGTTTCCCCACCTCCGTCGAAGGATCTGACTTCAGGCGGTGACGAT TACTCAGACGACAGTGGAGATGATACCAGTTCCAGTGAGAAGAAATCAGAGCATCACGGACCGAATAAGTTCGTTCTGGGGATTGCGATTGCTCTGTCCT CCATAGTTTTCCTCATTGCTTTCCTTATCTGTATGGCTAAAAGATGTACCTGA
AA sequence Show only first row Show all	>Lus10005430 pacid=23182237 polypeptide=Lus10005430 locus=Lus10005430.g ID=Lus10005430.BGIv1.0 annot-version=v1.0 MRKLTSLTITNANLSGAIPKHLADNNSNLTVVDFSRNSLKGRIPSSIAVLENLQSLNLSSNSLSGELPANFGDLISLKNVSLASNSLSGSIPDSMASISE LEHLDLSSNQFNGTIPKFLSEMKNLKHLNLANNGFHGVLPFNASFLKRLDVFRIKGNDNLCYNRTILSQSKLKLGIAACDKHGLPVSPPPSKDLTSGGDD YSDDSGDDTSSSEKKSEHHGPNKFVLGIAIALSSIVFLIAFLICMAKRCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10005430 [exp]	0	1
AT5G10160			Thioesterase superfamily prote...		Lus10020419 [exp]	3.5	0.8754
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	3.5	0.8977
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	3.6	0.9061
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	4.0	0.8991
AT3G60900		FLA10	FASCICLIN-like arabinogalactan...		Lus10038005 [exp]	4.9	0.8878
AT5G48660			B-cell receptor-associated pro...		Lus10022777 [exp]	7.3	0.8408
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031410 [exp]	11.3	0.8473
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	12.0	0.8508
AT5G45770		AtRLP55	receptor like protein 55 (.1)		Lus10039985 [exp]	12.4	0.8137
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10029253 [exp]	13.6	0.8374

Compare expression of checked genes

Lus10005430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.